Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq30018 93.3 5e-14 seq34317 82.4 9e-11 >seq30018 Length=17342 Score = 93.3 bits (102), Expect = 5e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 176573 ATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGC 176632 ||||||||||| | | || | || ||||| || ||| |||||| ||| || |||| Sbjct 7164 ATGGTATGCCTTTAAAAAATTTTAGAACTTTCAATTTCATGATTGTATCCCAGGCCGAGC 7223 Query 176633 ACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTC 176692 |||||| ||| | ||||||||| |||||| | || ||||| ||||| || | ||| |||| Sbjct 7224 ACAACACTCTTACGCACCCATTTCATATGTTAGGTGTAGCTGGTGTATTCGATGGCTCTC 7283 Query 176693 TTTTCTCAGCAATGCACGG 176711 | || | || ||||| || Sbjct 7284 TATTATGTGCTATGCATGG 7302 >seq34317 Length=297777 Score = 82.4 bits (90), Expect = 9e-11 Identities = 121/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Plus Query 176817 ACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCT 176876 ||| ||||| ||||||| | |||||||| |||||| |||||| ||||| | | Sbjct 200228 ACATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTT 200287 Query 176877 TCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGC-----ATCTGGTTTACTGCAATGGGT 176931 ||||||||| | | || | || || || | |||||||| || || | ||| Sbjct 200288 ACACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCAC-GCTTTAGGT 200346 Query 176932 GTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGT 176981 | ||| |||||||||||||| ||||||||||| |||||||| || || Sbjct 200347 ATCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGT 200396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 602910519168000