Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq31988 134 2e-26 seq33912 125 9e-24 seq34118 122 1e-22 seq33392 114 2e-20 seq1742 104 3e-17 seq34317 100 4e-16 seq30018 95.1 2e-14 seq33222 82.4 1e-10 >seq31988 Length=75934 Score = 134 bits (148), Expect = 2e-26 Identities = 188/261 (72%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 184323 TAGGTACAGCAGACTTTATGATACATCACATACACGCTTTCCAGATTCATGTTTGTGTAT 184382 |||| || ||||| || || |||||||||| || || || ||||||||| |||| Sbjct 57061 TAGGAACCGCAGATTTCTTGGTACATCACATTCATGCATTTATGATTCATGTGACGGTAT 57002 Query 184383 TAATTCTTCTCAAGGGTGTTTTATACTCTAGAAACTCACAATTAATACCAGATAAGAGTA 184442 | || | | || |||||| ||| || | | || | || ||||| ||||| || | Sbjct 57001 TGATACACTTGAAAGGTGTTCTATTTGCTCGTAGTTCCCGTTTGATACCGGATAA-AGCA 56943 Query 184443 AGT-TAGGATTCAGATTCCCTTGTGATGGTCCTGGTAGAGGAGGCACTTGTCAGGTATCA 184501 | | | || || | || |||||||||| | ||| ||||| || || ||||| |||| | Sbjct 56942 AATCTTGGTTTTCGTTTTTCTTGTGATGGACTTGGAAGAGGGGGTACATGTCAAGTATTA 56883 Query 184502 GGATGGGATCATGTATTCCTTGGTTTATTCTGGATGTATAATTGCATCTCTATAGTAATC 184561 | ||||||||| | || | || ||||||||||||| |||| ||| || ||||||| Sbjct 56882 GCCTGGGATCATTTCTTTTTAGGCCTATTCTGGATGTACAATTCCATTTCGGTAGTAATA 56823 Query 184562 TTCCACTTTAGTTGGAGAATG 184582 ||||| || ||||||| |||| Sbjct 56822 TTCCATTTCAGTTGGAAAATG 56802 Score = 123 bits (136), Expect = 3e-23 Identities = 209/300 (70%), Gaps = 16/300 (5%) Strand=Plus/Minus Query 183852 CTATCAGTATCATAG--TTTCAC--ATCATATGTATGCAATGCCACCTTATCCATATCTT 183907 |||| |||| ||| |||||| | ||||||||| | ||||| |||||||||||||| Sbjct 58997 CTATTTGTATTATATGCTTTCACTCACCATATGTATTCTATGCCCCCTTATCCATATCTG 58938 Query 183908 GGTATTGAATATCCAACAGTAGTAGGATTATTCACCCATCATATGTGGATAGGTGGTTTT 183967 | || ||| ||| ||| | | ||||||||| ||||| |||||||| ||||| ||| Sbjct 58937 GCTACTGACTATGGTACATAACTGTCATTATTCACACATCACATGTGGATTGGTGGATTT 58878 Query 183968 CTTATTGTGGGTGCATCAGCACATGCTT----CAATTGCTATGATAAGAGACTATAATCC 184023 ||||| || ||||| | || ||||| | | ||| |||| || || |||| ||| Sbjct 58877 CTTATAGTTGGTGCTGCTGCGCATGCATGTAGCCATTTTTATGGTACGAAACTAAGATC- 58819 Query 184024 TGTTCAACATATGGGAAATGTATTAGATAGAATACTTAAATCTAGAGATGCAATCATCAG 184083 |||| | ||| | ||| | | |||| | | | ||||||||||| Sbjct 58818 ----CAAC---TACTCAATACAACGGATCGTGTCCTTAGACATCGTGATGCAATCATATC 58766 Query 184084 TCACTTGAACTGGGTATGCATCTTTTTAGGTTTTCATAGTTTTGGTCTTTATATTCACAA 184143 || | ||||||| ||| || ||| |||| | ||| ||||||||| | |||||||| || Sbjct 58765 ACATCTCAACTGGGCATGTATGTTTCTAGGCTATCACAGTTTTGGTTTGTATATTCATAA 58706 >seq33912 Length=321585 Score = 125 bits (138), Expect = 9e-24 Identities = 187/261 (72%), Gaps = 6/261 (2%) Strand=Plus/Minus Query 184341 TGATACATCACATACACGCTTTCCAGATTCATGTTTGTGTATTAATTCTTCTCAAGGGTG 184400 || |||||||||| || || || ||||||||| ||||| || || | || |||| Sbjct 31965 TGGTACATCACATTCATGCATTTACGATTCATGTGACGGTATTGATACTCTTGAAAGGTG 31906 Query 184401 TTTTATACTCTAGAAACTCACAATTAATACCAGATAA-GAGTAAGTTAGGATTCAGATTC 184459 || ||| || | || | || ||||| ||||| | | | |||| ||| | || Sbjct 31905 TTCTATTTGCTCGTTGTTCCCGTTTGATACCGGATAAAGCGAATCTTAGTTTTC-GTTTT 31847 Query 184460 CCTTGTGATGGTCCTGGTAGAGGAGGCACTTGTCAGGTATCAGGATGGGATCATGTATTC 184519 ||||||||||| ||| | ||||| || || ||||| ||||||| |||||||||||| || Sbjct 31846 CCTTGTGATGGACCTAGAAGAGGGGGTACATGTCAAGTATCAGCATGGGATCATGTCTTT 31787 Query 184520 CTTGG-TTTATTCTGGATGTATAATTGCATCTCTATAGTAATCTTCCACTTTAGTTGGAG 184578 | || |||| || ||||| |||| ||| || ||||||| ||| | || ||||||| Sbjct 31786 TTAGGCCCTATTTTGAATGTACAATTCCATTTCGGTAGTAATATTCTATTTCAGTTGGAA 31727 Query 184579 AATGCA---AGATGTATGGGG 184596 | |||| |||||| | ||| Sbjct 31726 ATTGCAGTTAGATGTTTAGGG 31706 >seq34118 Length=323312 Score = 122 bits (134), Expect = 1e-22 Identities = 219/324 (68%), Gaps = 21/324 (6%) Strand=Plus/Minus Query 191218 TGTATTCTTAATCTATCCACTTGGTCAGCACAGTTGGTTCTTTGCACCTTCATTTGGAGT 191277 ||||||||| || ||||| || |||||| ||||||||||||| ||| ||||| || Sbjct 7060 TGTATTCTTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGT 7001 Query 191278 TGCAGCAATCTTTAGATATATTCTATTCATTCAAGGTTTCCACAATATTACACTCAACCC 191337 ||| | || ||| ||| || || || ||||||| || || ||| ||| | |||| Sbjct 7000 AGCAACTATATTTCGATCCATCCTCTTTTTTCAAGGGTTTCATAATTGGACATTGTACCC 6941 Query 191338 TTTCCACATGATGGGAGTTGCAGGTATTCTAGGTGGAGCATTACTATGTGCCATTCATGG 191397 || || ||||||||||||| ||| | | || || || ||||| || |||||||| Sbjct 6940 ATTTCATATGATGGGAGTTGTCGGTGTATTGGGCACTGCCTTGCTATGCGCTATTCATGG 6881 Query 191398 TGCTACAGTACAGAACACCTTGTATGAGGACTCAAGCATCTATACAGATGGTCAAGTTCA 191457 |||||| ||| | || || || | ||| ||| ||| | | | Sbjct 6880 TGCTACCGTAGAAAATACTTTATTTGA------------------AGACGGTGATGGTGC 6839 Query 191458 AAGTACAACCTTTAGAGCATTTGATCCAACACAGGATGAGGAAACTTATTCTATGATCAC 191517 || |||| || | || ||| | ||||| || ||| ||||||||||| ||||| || Sbjct 6838 AAATACA---TTCTGTGCTTTTAAGCCAACTCAATCTGAAGAAACTTATTCAATGATTAC 6782 Query 191518 TGCAAACAGATTCTGGTCACAGAT 191541 ||| ||| || ||||| || || Sbjct 6781 TGCTAACCACTTTTGGTCCCAAAT 6758 >seq33392 Length=91532 Score = 114 bits (126), Expect = 2e-20 Identities = 177/250 (71%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 184289 GTTGGTGGTAAGATTGCTAATGCTCCTTTTGTACTAGGTACAGCAGACTTTATGATACAT 184348 || ||||| || ||||| | ||| || | |||| || ||||| || || ||||| Sbjct 2142 GTGGGTGGCAAAGTTGCTTTGGTGCCTATTCCATTAGGAACCGCAGATTTCTTGGTACAT 2201 Query 184349 CACATACACGCTTTCCAGATTCATGTTTGTGTATTAATTCTTCTCAAGGGTGTTTTATAC 184408 ||||| || || || ||||||||| ||||| || || | || |||||| ||| Sbjct 2202 CACATTCATGCATTTACGATTCATGTGACGGTATTGATACTCTTGAAAGGTGTTCTATTT 2261 Query 184409 TCTAGAAACTCACAATTAATACCAGATAAGAGTAAGT-TAGGATTCAGATTCCCTTGTGA 184467 | | | || | || ||||| ||||| || || | | | || |||| |||||||| Sbjct 2262 GCCCGTAGTTCCCGTTTGATACCGGATAA-AGCAAATCTTTGTTTTCGATTTCCTTGTGA 2320 Query 184468 TGGTCCTGGTAGAGGAGGCACTTGTCAGGTATCAGGATGGGATCATGTATTCCTTGGTTT 184527 ||| ||||| ||||| || || ||||| ||||||| ||||||||||| || | || | Sbjct 2321 TGGACCTGGAAGAGGGGGTACATGTCAAGTATCAGCCTGGGATCATGTCTTTTTAGGCCT 2380 Query 184528 ATTCTGGATG 184537 |||||||||| Sbjct 2381 ATTCTGGATG 2390 >seq1742 Length=10247 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 183809 TCAAGACATGCACAACTATCACTGAATCTGGCAATGCTAGGATCTATCAGTATCATAGTT 183868 ||| | ||||| ||| |||| || || || |||||| |||| ||| | | || || || Sbjct 7 TCATGGCATGCTCAATTATCTCTTAACCTAGCAATGTTAGGCTCTTTAACCATTATTGTA 66 Query 183869 TCACATCATATGTATGCAATGCCACCTTATCCATATCTTGGTATTGAATATCCAACAGTA 183928 | || ||||||||| | ||||| |||||||||||||| | || ||| ||| ||| | Sbjct 67 GCTCACCATATGTATTCCATGCCCCCTTATCCATATCTGGCTACTGACTATGGTACACAA 126 Query 183929 GTAGGATTATTCACCCATCATATGTGGATAGGTGG 183963 | ||||||||| ||||| |||||||| ||||| Sbjct 127 CTGTCATTATTCACACATCACATGTGGATTGGTGG 161 >seq34317 Length=297777 Score = 100 bits (110), Expect = 4e-16 Identities = 135/185 (73%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 190370 CATGGTTACTTTGGTAGACTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTTTA 190429 |||||||| |||||| | | |||||||| |||||| ||||||||||| | ||| Sbjct 200229 CATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTA 200288 Query 190430 CACTTCTTCTTAGCAGTATTCCCTGTAACCTGT---GTAT--GGTTAACATCAATGGGTA 190484 ||||||||||||| | | |||||| | |||| |||| || | | |||| Sbjct 200289 CACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCACG-CTTTAGGTA 200347 Query 190485 TTTGCACAATGGCATTCAACTTAAATGGTTTCAACTTTAACCAGTCTGTAGTTGATGCAC 190544 | ||| |||||||||||| |||| |||||||| || ||||| || ||||||||| | Sbjct 200348 TCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGATAGTC 200407 Query 190545 AAGGT 190549 ||||| Sbjct 200408 AAGGT 200412 >seq30018 Length=17342 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 190125 ATGGTATGCCTTTAGGTATCTCAGGTACATTCAACTTCATGTTTGTATTCCAAGCAGAAC 190184 |||||||||||||| | | | || ||||| |||||| |||||| ||| || || | Sbjct 7164 ATGGTATGCCTTTAAAAAATTTTAGAACTTTCAATTTCATGATTGTATCCCAGGCCGAGC 7223 Query 190185 ATAATATCCTTATGCACCCATTCCATATGGCAGGTGTAGCAGGTATGTTTGGTGGAGCAT 190244 | || | |||| ||||||||| |||||| ||||||||| ||| | || | ||| | Sbjct 7224 ACAACACTCTTACGCACCCATTTCATATGTTAGGTGTAGCTGGTGTATTCGATGGCTCTC 7283 Query 190245 TATTCTCTGCAATGCATGGTTC 190266 |||| | ||| ||||||||||| Sbjct 7284 TATTATGTGCTATGCATGGTTC 7305 >seq33222 Length=111615 Score = 82.4 bits (90), Expect = 1e-10 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 191270 TTTGGAGTTGCAGCAATCTTTAGATATATTCTATTCATTCAAGGTTTCCACAATATTACA 191329 ||||| || ||||| || ||| ||| || | || ||||||| || || ||| ||| Sbjct 60571 TTTGGTGTAGCAGCTATATTTCGATTCATCATCTTTTTTCAAGGGTTTCATAATTGGACA 60512 Query 191330 CTCAACCCTTTCCACATGATGGGAGTTGCAGGTATTCTAGGTGGAGCATTACTATGTGCC 191389 | ||||| || || |||||||||||||| ||| | | |||| | || ||||| | Sbjct 60511 TTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTCCCTTGCTATGCACT 60452 Query 191390 ATTCATGGTGCTACAGTACAGAACACCTTGTATGAGGA 191427 |||||||||||||| || | || || || | ||| || Sbjct 60451 ATTCATGGTGCTACTATAGAAAATACTTTATTTGAAGA 60414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 630816294184000