Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq31522 89.7 4e-13 seq34050 84.2 2e-11 >seq31522 Length=43835 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||||||||| ||||||||| || || | || || |||||| | Sbjct 28946 ATGCAAATCTTTGTGAAAACTCTGACTGGGAAAACGATCACCCTAGAAGTTGAAAGCTCA 29005 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || |||||| | || || ||||| |||| |||||| |||| | Sbjct 29006 GA-----TACAATTGATAACGTGAAGGCGAAAATTCAGGACAGAGAAGGAATTCCTCCAG 29060 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| |||| ||||| || || ||||| | || || | || | | | |||||| Sbjct 29061 ATCAGCAGAGGTTGATTTTCGCGGGTAAACAGCTCGAGGATGGCCGAACCCTAGCCGATT 29120 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||| ||||| || ||||| ||||| || | ||||| || || Sbjct 29121 ACAATATCCAGAAAGAATCGACGCTGCATCTGGTTCTGAGGTTGCGCGGTGG 29172 >seq34050 Length=239353 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| || || || || |||||| | || ||||| ||| || Sbjct 45018 ATGCAGATCTTTGTGAAAACCCTAACCGGCAAGACTATTACTCTCGAGGTCGAGAGCTCC 44959 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| ||||| || || || || || || | ||| ||| | Sbjct 44958 GACACCATCGACAAT--GTCAAGGCCAAGATTCAAGATAAGGAGGGCATCCCGCCGGACC 44901 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || || ||||| || ||| | || |||| || | | | ||||||||| Sbjct 44900 AGCAGAGGCTGATCTTCGCCGGGAAGCAACTCGAGGACGGTCGTACCCTCGCCGATTACA 44841 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | ||||| || ||| ||| | ||||||||| | || ||| | || || Sbjct 44840 ATATCCAGAAGGAGTCCACCCTTCATTTGGTTCTCCGATTGAGGGGAGG 44792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355526710549800