Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq34423 100 2e-16 seq33784 91.5 1e-13 >seq34423 Length=256361 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||||||||| || || | ||| | ||| || ||| || || || || || ||||| Sbjct 118717 CATGCCTCCTCTCAAACGGAGCACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAATC 118776 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 ||| || || || |||| || |||||||| || || || || || | ||||||||| | Sbjct 118777 GGCGAGGGTGCGGCCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGG 118836 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG-TATCGCTCGACT 39232 ||| | | ||| |||||| || || ||||| ||| | || | | ||| || Sbjct 118837 GGGGATTCCCTCCTTGTCCTGAATCTTAGCTTTGA-CGTTGTCAATGGTGTCGGAGCTCT 118895 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || | ||||| | ||||| || || ||||| || ||||||||||| Sbjct 118896 CCACCTCGAGGGTGATGGTCTTTCCAGTTAGGGTTTTGACGAAGATTTGCAT 118947 >seq33784 Length=161669 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | || | ||| ||||| || || ||| ||||| || || || || ||| Sbjct 105427 CCTCCCCTCAGTCGCAGCACTAAATGGAGTGTTGACTCCTTTTGAATGTTGTAGTCTGCA 105368 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 ||||| | | ||||| ||||| ||||| ||||| || || ||||||||||| | || Sbjct 105367 AGTGTCCTCCCATCATCGAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGGTCTGGAGGA 105308 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCGACTC 39233 | || || |||||| ||| | | || || | | | | | | ||||| ||| ||| Sbjct 105307 ATGCCTTCCTTGTCC-TGAATCTTTGCTTTAACATTGTCAATTGTATCTGAGCT---CTC 105252 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| |||| ||||| | || || || | || || |||||||| ||||| Sbjct 105251 CACTTCCAATGTGATGGTCTTCCCAGTTAAGGTCTTGACAAAGATCTGCAT 105201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429140404266200