Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq33488 120 4e-22 seq33140 105 9e-18 seq34321 100 4e-16 seq33599 98.7 1e-15 seq31897 86.0 9e-12 seq2172 86.0 9e-12 seq34213 84.2 3e-11 seq34130 84.2 3e-11 seq34118 84.2 3e-11 seq32570 84.2 3e-11 >seq33488 Length=63435 Score = 120 bits (132), Expect = 4e-22 Identities = 267/398 (67%), Gaps = 17/398 (4%) Strand=Plus/Plus Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 ||||| || | ||| | | ||||| || | |||||||| | ||||| || ||| Sbjct 35323 ATCCAGCGGAGAGCCGAGTTGGCCTTGTTTTCCACACAAGGTAGGGTTTCAATTGCACGG 35382 Query 48378 AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 || || || || |||| | ||||| | ||||| |||| || || || ||||| Sbjct 35383 AACAGTCTATTCTTCTCATCGGAGTCTTTGATGTAAGACTCTAGCAAGAGGCTGTACATC 35442 Query 48438 TCGGA----GTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 ||||| ||| || || || || || || || || ||||| || | || || | Sbjct 35443 TCGGATGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAACGCACGAGCCTCGGA 35502 Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553 || ||| ||||| | || | |||| | ||| || || || ||| || Sbjct 35503 GACCTGGACCTCTTT-CATAG--GTTCT-CTAAA---------ACAATGCCGTCAGAGGC 35549 Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCA 48613 ||||| || || | || || ||||| || | ||| |||| || ||| || ||| ||| Sbjct 35550 GGCAAAGAAAGCAAGCACGTGCTTAATGAAGTGTTTCTCGTCGGGAGTGAGGGTATCCCA 35609 Query 48614 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTT 48673 || ||||| || | || | ||| ||||||||||| ||||| || || ||||| ||||| Sbjct 35610 GTGATTGAGGTCCTGAGAGAGATCCACTTCTTCAGCAGTCCAGAAAGAGGCCTCGGCTTT 35669 Query 48674 TTTATACATATTCCATATATCACTGTATTGGATTGGGA 48711 || ||||| | ||| || ||| |||||||||||||| Sbjct 35670 CTTGTACATCTCCCAAATCTCAGGGTATTGGATTGGGA 35707 >seq33140 Length=116131 Score = 105 bits (116), Expect = 9e-18 Identities = 128/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||| |||||||||| ||||| || | ||||| || ||||| ||| ||||||| Sbjct 76852 CTCTGTTTCATATTGCGTATAGAGTTTGTTGAATTCTTCACCCCAGCAATCTGCCAATCC 76911 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAA 78015 |||| |||||||| || | ||||||||| | |||| | | || |||| | ||||| Sbjct 76912 AGGGGCCTCATTTGGACAAAACAATGACCATTGCCCAT-TGCTTTGTACTCTCTCCATAA 76970 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 | |||||||||| ||| |||||| || ||||| |||| || ||| ||||| Sbjct 76971 ATAGATCAGGTACCCAGAGAGCATAGAAAAGATCCCGGGCTCGATGCTCTTC 77022 Score = 86.0 bits (94), Expect = 9e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| ||||||| | || || |||||||| || |||||| ||| ||| | || || Sbjct 77776 AGTTCCACCATTAAAAAGAGTTGGGGATGCATGTGTGAACCATCTTTGAGACATTAAATG 77835 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCA 78516 ||| || | || || ||||| || || | ||| || || || || || || | ||||| Sbjct 77836 GTACGTCTTGATGGCAGATTCAATATCATCCTTG-TGGATCCCAACAGCAACTCTCATCA 77894 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 |||||||||| || || ||||| || | | || || | ||| ||| | || | Sbjct 77895 ACATATGCTGTGGCCTCTCAACAACTTTGCCTTGAACCTTTAAGAGGTAAGATCTCTCAA 77954 Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| |||||||| || | || |||||||| || || || || Sbjct 77955 GTGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCGGTCATATATGAT 78003 >seq34321 Length=180555 Score = 100 bits (110), Expect = 4e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||||||||| || | |||||| || |||| ||| | || | | |||||||| ||| || Sbjct 112339 ACCTCCCTGGTCAACATATCTTGCAGTGTCATTGAACACACGTAGCATTGGAACAATTCC 112398 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || |||||||||||||| ||| ||| ||||| ||| | || || || ||| | || Sbjct 112399 ATTGGATGTTCCATTTGTCCCACGAATGTAACTCCCAGTAGCACGGATGTTATGCACAGA 112458 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || ||||| || || ||| |||| ||| || || | ||||| || || Sbjct 112459 GACACCAATTCCACCCGCTGACTTGCTAATTACAGCACACTCCTTTAGAGTATCATATAT 112518 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 |||||| || || ||||| ||||| | ||| || |||||| Sbjct 112519 ACCCTCAATGCTATCATCTTTCATGCAGATAAGGAAGCAGCTA 112561 Score = 96.9 bits (106), Expect = 5e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 || ||||||||||| ||||| || |||||||| || ||||| ||| ||||||| Sbjct 111919 CTTTCTTTCATATTCTGTATAAAGTTTCTCAAATTCTTCACCCCAGCAATCTGCCAATCC 111978 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 || |||||||| || | || ||||| | |||| || |||| | |||||| Sbjct 111979 TGGTGCCTCATTTGGACAAAATAAAGACCATTGCCCATTACTCTGCACTCTCTCCATAAA 112038 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 ||||||||| | ||| |||||| ||| |||||||| | | ||||||||| Sbjct 112039 GAGATCAGGAACCCAGAGAGCATAAAAGAGATCTCGTGCACGATGTTCTTC 112089 >seq33599 Length=161954 Score = 98.7 bits (108), Expect = 1e-15 Identities = 194/287 (68%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 ||||| || | ||||| | ||||||||||| ||||| |||| || || || || | Sbjct 157586 ATCCAACGGAGAGCCCACTTAGCCTTCTTCTCCACACAGGGCACAGTATCAATCGCGTGG 157527 Query 48378 AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 || | | || || | ||| || | |||||| || | | |||||| ||||| Sbjct 157526 AACAACCTATCCTTCTCTTCAGAATCCTTGATGTAAGTCTCCAACAGAAGACTGTACATC 157467 Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 || ||||| ||||| || || || ||||| ||||| ||||| | ||| || | ||| Sbjct 157466 TCAGAGTGGATATTCTCGATGGCGATCTGGAATCCATAAAACGCACGCGCCTCCGCAATC 157407 Query 48498 TGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCA 48557 || |||||| | || ||| | || | |||||| || || || || || ||| Sbjct 157406 TGGACCTCCTTCATGAACCGTCCGGCAAGATTCTCCAAAACGATGCCGTCGGAGGCGGCA 157347 Query 48558 AAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAG 48604 ||||| || | ||| || |||||||| | || |||| ||| || || Sbjct 157346 AAAAAGGCAAGTACGTGCTTAATAAAGTGCTTCTCGTCGGAGGTTAG 157300 >seq31897 Length=38707 Score = 86.0 bits (94), Expect = 9e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 || ||||||||||| ||||| || ||||||| || ||||| ||| ||||||| Sbjct 35633 CTTTCTTTCATATTCTGTATAAAGTTTCTCAAATTATTCACCCCAGCAATCTGCCAATCC 35574 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 || ||||||||||| | || ||||| | |||| || |||| || |||||| Sbjct 35573 CGGTGCCTCATTTGGGCAAAATAAAGACCATTGTCCATTACTCTGCACTCTTTCCATAAA 35514 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTC 78051 ||||||||| | ||| |||||| ||| | ||||| Sbjct 35513 GAGATCAGGAAACCAAAGAGCATAAAACATATCTC 35479 >seq2172 Length=10519 Score = 86.0 bits (94), Expect = 9e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 || ||||||||||| ||||| || ||||||| || ||||| || ||||||| Sbjct 285 CTTTCTTTCATATTCTGTATAAAGTTTCTCAAATTATTCACCCCAGCAATATGCCAATCC 226 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 || ||||||||||| | || ||||| | |||| || |||| || |||||| Sbjct 225 CGGTGCCTCATTTGGGCAAAATAAAGACCATTGTCCATTACTCTGCACTCTTTCCATAAA 166 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTC 78051 ||||||||| | ||| |||||| |||| | ||||| Sbjct 165 GAGATCAGGAACCCAAAGAGCATTAAAGATATCTC 131 >seq34213 Length=399465 Score = 84.2 bits (92), Expect = 3e-11 Identities = 122/171 (71%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 || ||||||||||| ||||| || |||||||| || || | ||| ||||||| Sbjct 42416 CTTTCTTTCATATTCTGTATAAAGTTCCTCAAATTCTTCACCGCGGCAATCTGCCAATCC 42475 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 || |||||||| || | || ||||| | |||| ||| |||| || ||||| Sbjct 42476 TGGTGCCTCATTTGGACAAAATAAAGACCATTGCCCATTACCCTGTACTCTTTCGATAAA 42535 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 ||||||||| | ||| |||||| ||| ||||||| || ||||||||| Sbjct 42536 GAGATCAGGAACCCAGAGAGCATAAAAGAGATCTC-AGTAGGATGTTCTTC 42585 >seq34130 Length=102090 Score = 84.2 bits (92), Expect = 3e-11 Identities = 123/171 (72%), Gaps = 5/171 (3%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 || ||||||||||| ||| | || |||||||| || || || ||| ||||||| Sbjct 14629 CTTTCTTTCATATTCTGTAGTT--CC--TCAAATTCTTCACCGCAGCAATCTGCCAATCC 14574 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 || |||||||| || | || ||||| | |||| || |||| || |||||| Sbjct 14573 TGGTGCCTCATTTGGACAAAATAAAGACCATTGCCCATTACTCTGTACTCTTTCCATAAA 14514 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 ||||||||| | ||| |||||| ||| ||||||| || | ||||||||| Sbjct 14513 GAGATCAGGAACCCACAGAGCATAAAAGAGATCTC-GGCACGATGTTCTTC 14464 >seq34118 Length=323312 Score = 84.2 bits (92), Expect = 3e-11 Identities = 122/171 (71%), Gaps = 1/171 (1%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 || ||||||||||| ||||| || |||||||| || || || ||| ||||||| Sbjct 274233 CTTTCTTTCATATTCTGTATAAAGTTCCTCAAATTCTTCACCGCAGCAATCTGCCAATCC 274174 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 || |||||||| || | || || || | |||| ||| |||| || |||||| Sbjct 274173 TGGTGCCTCATTTGGACAAAATAAAGAGCATTGCCCATTACCCTGTACTCTTTCCATAAA 274114 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 ||||||||| | ||| ||||| ||| | ||||| || | ||||||||| Sbjct 274113 GAGATCAGGAACCCAGGGAGCATAAAAGATATCTC-GGCACGATGTTCTTC 274064 >seq32570 Length=55214 Score = 84.2 bits (92), Expect = 3e-11 Identities = 119/165 (72%), Gaps = 3/165 (2%) Strand=Plus/Minus Query 77903 TTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCA 77962 |||||||| ||||| || |||||||| || || || ||| ||||||| || Sbjct 34768 TTCATATTCTGTATAAAGTTCCTCAAATTCTTCACCGCAGCAATCTGCCAATCCTGGTGC 34709 Query 77963 TTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATC 78022 |||||||| || | || ||||| | |||| ||| |||| || |||||||||||| Sbjct 34708 CTCATTTGGACAAAATAAAGACCATTGCCCATTACCCTATACTCTTTCCATAAAGAGATC 34649 Query 78023 AGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 ||| | || |||||| ||| ||||||| ||| ||||||||| Sbjct 34648 AGGAACCC--AGAGCATAAAAGAGATCTC-GGTAGGATGTTCTTC 34607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693996707936000