Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq33140 109 8e-19 seq33488 105 1e-17 seq34321 84.2 3e-11 >seq33140 Length=116131 Score = 109 bits (120), Expect = 8e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 ||| ||||| || | ||||| ||||| | ||| | || | | ||| |||| ||| || Sbjct 77395 ACCCCCCTGGTCAACATATCGTGCAGTATCATTGAACACACGTAGCATAGGAACAATTCC 77454 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| |||||||||||| ||||||||| ||| ||||| ||||| | ||| Sbjct 77455 ATTGGATGTCCCATTTGTTCCACGAATATAACTCCCAGTAGCACGGATATTGTGCACAGA 77514 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || ||||||||||| ||| |||| |||||| || | || ||||| || Sbjct 77515 AACACCAATTCCTCCTGCTGATTTGCTAATTACAGCACACTCCTTGAGAGTATCATATAT 77574 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||| || || ||||| || ||||| | |||||| |||||| Sbjct 77575 GCCATCAATGCTATCCTCTTTCATGCAGATAAGAAAGCAGCTA 77617 Score = 86.0 bits (94), Expect = 9e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| ||||||| | || || |||||||| ||||||||| ||| ||| | || || Sbjct 77776 AGTTCCACCATTAAAAAGAGTTGGGGATGCATGTGTGAACCATCTTTGAGACATTAAATG 77835 Query 77053 GTATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCA 77111 ||| || | || | | ||| ||||| | ||| || || || ||||| || | ||||| Sbjct 77836 GTACGTCTTGATGGCAGATTCAATATCATCCTTG-TGGATCCCAACAGCAACTCTCATCA 77894 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 |||||||||| || | || ||| || | | || || | ||| ||| | || | Sbjct 77895 ACATATGCTGTGGCCTCTCAACAACTTTGCCTTGAACCTTTAAGAGGTAAGATCTCTCAA 77954 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| |||||||| || | || |||||||| || || || || Sbjct 77955 GTGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCGGTCATATATGAT 78003 >seq33488 Length=63435 Score = 105 bits (116), Expect = 1e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 47041 GCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTC 47100 || ||||| || || | || || ||||| || | ||| || |||| ||| || ||| | Sbjct 35548 GCGGCAAAGAAAGCAAGCACGTGCTTAATGAAGTGTTTCTCGTCGGGAGTGAGGGTATCC 35607 Query 47101 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCT 47160 |||| ||||| || | || | ||| ||||||||||| |||||||| || ||||| ||| Sbjct 35608 CAGTGATTGAGGTCCTGAGAGAGATCCACTTCTTCAGCAGTCCAGAAAGAGGCCTCGGCT 35667 Query 47161 TTTTTATACATATTCCATATATCACGATATTGGATCGG 47198 || || ||||| | ||| || ||| | |||||||| || Sbjct 35668 TTCTTGTACATCTCCCAAATCTCAGGGTATTGGATTGG 35705 >seq34321 Length=180555 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 || ||||||||||| |||||| | |||||||| || ||||| ||| |||| || Sbjct 111919 CTTTCTTTCATATTCTGTATAAAGTTTCTCAAATTCTTCACCCCAGCAATCTGCCAATCC 111978 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 || ||||| ||||| | || ||||| | |||| || || | | |||||| Sbjct 111979 TGGTGCCTCATTTGGACAAAATAAAGACCATTGCCCATTACTCTGCACTCTCTCCATAAA 112038 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 ||||||||| | ||| |||||| ||| |||||||| | | | ||||||| Sbjct 112039 GAGATCAGGAACCCAGAGAGCATAAAAGAGATCTCGTGCACGATGTTCTTC 112089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712244635968000