Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq34317 149 8e-31 seq34118 132 6e-26 seq33222 122 1e-22 seq33207 82.4 9e-11 >seq34317 Length=297777 Score = 149 bits (164), Expect = 8e-31 Identities = 147/189 (78%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 183901 CATGGATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTT 183960 ||||| || ||||||| |||||||||| |||||| || ||||| |||||||| | Sbjct 200229 CATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTA 200288 Query 183961 CACTTCTTCCTTGCTGCTTGGCCAGT-----GGTCGGCATCTGGTTTACTGCTCTTGGTG 184015 ||||||||| | | ||||||||| || ||| || |||||||| || ||| | ||| Sbjct 200289 CACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCAC-GCTTTAGGTA 200347 Query 184016 TTAGCACTATGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTC 184075 | |||| ||||||||| ||||| || ||||| || |||||||| ||| | ||||| ||| Sbjct 200348 TCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGATAGTC 200407 Query 184076 AAGGTCGTG 184084 ||||||||| Sbjct 200408 AAGGTCGTG 200416 >seq34118 Length=323312 Score = 132 bits (146), Expect = 6e-26 Identities = 217/313 (69%), Gaps = 0/313 (0%) Strand=Plus/Minus Query 186375 TTTGTTAGTGTATTCCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCC 186434 |||||| ||||||| | || || || || || ||||| |||||||| || || Sbjct 7068 TTTGTTTCTGTATTCTTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGT 7009 Query 186435 TTTGGAGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACG 186494 ||||| || ||| | || ||| ||| | | | || | ||||| || || || ||||| Sbjct 7008 TTTGGTGTAGCAACTATATTTCGATCCATCCTCTTTTTTCAAGGGTTTCATAATTGGACA 6949 Query 186495 TTGAATCCATTCCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCA 186554 ||| | ||||| || |||||||| || | ||| | | || ||| |||| | || Sbjct 6948 TTGTACCCATTTCATATGATGGGAGTTGTCGGTGTATTGGGCACTGCCTTGCTATGCGCT 6889 Query 186555 ATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTC 186614 || ||||||| ||| |||||||||||| | | |||||| || || ||||| |||||| Sbjct 6888 ATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACATTC 6829 Query 186615 AAAGCATTCGATACGACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTC 186674 || || | | || ||| |||||||| ||||| ||| | ||||| ||| || Sbjct 6828 TGTGCTTTTAAGCCAACTCAATCTGAAGAAACTTATTCAATGATTACTGCTAACCACTTT 6769 Query 186675 TGGTCACAGATCT 186687 ||||| || |||| Sbjct 6768 TGGTCCCAAATCT 6756 >seq33222 Length=111615 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 186435 TTTGGAGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACG 186494 ||||| || ||||| || ||| ||||| | | || | ||||| || || || ||||| Sbjct 60571 TTTGGTGTAGCAGCTATATTTCGATTCATCATCTTTTTTCAAGGGTTTCATAATTGGACA 60512 Query 186495 TTGAATCCATTCCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCA 186554 ||||| ||||| || |||||||| || || ||| | | |||| | | |||| | | Sbjct 60511 TTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTCCCTTGCTATGCACT 60452 Query 186555 ATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTC 186614 || ||||||| |||| ||||||||||| | | ||||||||| || ||||| |||||| Sbjct 60451 ATTCATGGTGCTACTATAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTC 60392 Query 186615 AAAGCATTCGATACGACGCAAGAAGAAGAAACCTATTCGATGGTCAC 186661 || || | | || ||| |||||||| ||||| ||||| || Sbjct 60391 CGCGCTTTTAACCCAACTCAATCTGAAGAAACTTATTCAATGGTTAC 60345 >seq33207 Length=57149 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 170999 ATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGG 171058 ||| || || ||| |||| || | || ||| |||| || || || || | ||||| Sbjct 51990 ATACATCCTGGATTCTGCAGAGAACGCGGGAGTTGAGCTGCCATACTCTTGCAGGGCTGG 51931 Query 171059 TGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATC 171118 || || ||||||||||||||||| || | | || || ||||||||||||||| ||| Sbjct 51930 CGCATGCTCGACCTGTGCTGGGAAGATCGTGGCAGGCTCCGTTGATCAATCCGATGGATC 51871 Query 171119 TTTCCTTGATGATGATCAGATTGAATCA-GGTTTCATTCTGACCTGCGTCTCATATCCTA 171177 ||| || || || |||| | |||| | || | | ||||| ||||| || || || | Sbjct 51870 TTTTCTCGAAGAGCATCACA-TGAACGACGGCTATCTGCTGACTTGCGTTTCTTACCCAA 51812 Query 171178 CAAGTGATTGTGTAATC 171194 | ||||| || ||| Sbjct 51811 CCTCAGATTGCGTGATC 51795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621468546888000