Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq34118 149 7e-31 seq34317 143 3e-29 seq33222 125 8e-24 >seq34118 Length=323312 Score = 149 bits (164), Expect = 7e-31 Identities = 213/299 (71%), Gaps = 1/299 (0%) Strand=Plus/Minus Query 165580 TTCTT-ATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCA 165638 ||||| || ||||| || || || || |||||||| || || || || || ||| Sbjct 7056 TTCTTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCA 6997 Query 165639 GCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTT 165698 | || || |||| | | ||||| | |||||||| ||||| ||||| || | || ||| Sbjct 6996 ACTATATTTCGATCCATCCTCTTTTTTCAAGGGTTTCATAATTGGACATTGTACCCATTT 6937 Query 165699 CACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTT 165758 || |||||||| || | ||| | || ||| || ||||| | || |||||||||| | Sbjct 6936 CATATGATGGGAGTTGTCGGTGTATTGGGCACTGCCTTGCTATGCGCTATTCATGGTGCT 6877 Query 165759 ACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGAT 165818 || ||||| |||||||| | |||||| ||||| ||||| || ||| || ||| | Sbjct 6876 ACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACATTCTGTGCTTTTAAG 6817 Query 165819 AGTACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGAT 165877 ||||| || ||||||||||| ||| | |||||||||| || ||||| || || Sbjct 6816 CCAACTCAATCTGAAGAAACTTATTCAATGATTACTGCTAACCACTTTTGGTCCCAAAT 6758 >seq34317 Length=297777 Score = 143 bits (158), Expect = 3e-29 Identities = 146/189 (77%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 164633 CACGGTTACTTTGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTG 164692 || ||||| ||||||| |||| |||||||| ||| ||||||||||| |||||| | Sbjct 200229 CATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTA 200288 Query 164693 CACTTCTTCCTCGCAGCATGGCCTGT-----TGTCGGTATCTGGTTTACTGCTCTGGGCG 164747 ||||||||| | | || |||||||| || ||||||||||| || ||| | || Sbjct 200289 CACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCAC-GCTTTAGGTA 200347 Query 164748 TTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTC 164807 | |||| |||||||||||||| ||||||||||| |||||||| ||| | | ||| ||| Sbjct 200348 TCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGATAGTC 200407 Query 164808 AGGGTCGTG 164816 | ||||||| Sbjct 200408 AAGGTCGTG 200416 >seq33222 Length=111615 Score = 125 bits (138), Expect = 8e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 165627 TTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACG 165686 || || || ||||| || || |||||| | |||| | |||||||| ||||| ||||| Sbjct 60571 TTTGGTGTAGCAGCTATATTTCGATTCATCATCTTTTTTCAAGGGTTTCATAATTGGACA 60512 Query 165687 CTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCC 165746 |||| || ||||| |||||||| || || ||| | || || | | ||||| | | Sbjct 60511 TTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTCCCTTGCTATGCACT 60452 Query 165747 ATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACTTTC 165806 |||||||||| ||| |||| |||||||| | |||||||||||| ||||| || ||| Sbjct 60451 ATTCATGGTGCTACTATAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTC 60392 Query 165807 AAAGCATTTGATAGTACTCAGGAAGAGGAAACTTATTCCATGGTCAC 165853 || ||| | ||||| || ||||||||||| ||||| || Sbjct 60391 CGCGCTTTTAACCCAACTCAATCTGAAGAAACTTATTCAATGGTTAC 60345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557114869368000