Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq34118 159 4e-34 seq34317 149 7e-31 seq33222 104 3e-17 seq31051 82.4 9e-11 >seq34118 Length=323312 Score = 159 bits (176), Expect = 4e-34 Identities = 223/313 (71%), Gaps = 0/313 (0%) Strand=Plus/Minus Query 179253 TTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCG 179312 ||||| ||||| || | || ||||| || || ||||| |||||||||||||| Sbjct 7068 TTTGTTTCTGTATTCTTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGT 7009 Query 179313 TTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACG 179372 ||||| || ||| | || || || | | | ||||| | || || || || || ||||| Sbjct 7008 TTTGGTGTAGCAACTATATTTCGATCCATCCTCTTTTTTCAAGGGTTTCATAATTGGACA 6949 Query 179373 CTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCC 179432 | |||| || || |||||||| || | ||| | ||||| || ||||| || || Sbjct 6948 TTGTACCCATTTCATATGATGGGAGTTGTCGGTGTATTGGGCACTGCCTTGCTATGCGCT 6889 Query 179433 ATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTC 179492 |||||||||||||| ||||| || || | ||||||||| |||| ||||||||||| Sbjct 6888 ATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACATTC 6829 Query 179493 AAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTC 179552 || || |||| || ||| || || || ||||| ||| ||||||| |||| || Sbjct 6828 TGTGCTTTTAAGCCAACTCAATCTGAAGAAACTTATTCAATGATTACTGCTAACCACTTT 6769 Query 179553 TGGTCTCAGATCT 179565 ||||| || |||| Sbjct 6768 TGGTCCCAAATCT 6756 >seq34317 Length=297777 Score = 149 bits (164), Expect = 7e-31 Identities = 144/184 (78%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 178303 CATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTG 178362 |||||||| || |||| ||||||||||||| || ||||||||||| |||||| | Sbjct 200229 CATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTA 200288 Query 178363 CACTTCTTCCTCGCAGCATGGCCTGT-----TGTCGGTATCTGGTTCACTGCTCTTGGTG 178417 ||||||||| | | || |||||||| || |||||||||||||| ||| | ||| Sbjct 200289 CACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCAC-GCTTTAGGTA 200347 Query 178418 TTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTC 178477 | |||| |||||||||||||| ||||||||||| |||||||| ||| | | ||||||| Sbjct 200348 TCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGATAGTC 200407 Query 178478 AGGG 178481 | || Sbjct 200408 AAGG 200411 >seq33222 Length=111615 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 179313 TTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACG 179372 ||||| || ||||| || || || ||| | |||| | || || || || || ||||| Sbjct 60571 TTTGGTGTAGCAGCTATATTTCGATTCATCATCTTTTTTCAAGGGTTTCATAATTGGACA 60512 Query 179373 CTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCC 179432 | ||||| || || |||||||| || || ||| | |||| | | ||||| || | Sbjct 60511 TTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTCCCTTGCTATGCACT 60452 Query 179433 ATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTC 179492 |||||||||||||| |||| || || | |||||||| |||| ||||||||||| Sbjct 60451 ATTCATGGTGCTACTATAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTC 60392 Query 179493 AAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTAC 179539 || || | || || ||| || || || ||||| |||||||| Sbjct 60391 CGCGCTTTTAACCCAACTCAATCTGAAGAAACTTATTCAATGGTTAC 60345 >seq31051 Length=39587 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/105 (79%), Gaps = 6/105 (6%) Strand=Plus/Minus Query 178348 AACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACT 178407 ||||| |||||| | ||||||||| | || || || ||||| || ||||| ||||||||| Sbjct 26133 AACTCTCGTTCGTTACACTTCTTCTTAGCTGCTTG-CCTGTAGTAGGTATTTGGTTCACT 26075 Query 178408 GCTCTT---GGTGTTAGCACCATGGCATTCAACCTCAACGGTTTC 178449 || | ||| ||| ||| ||||||||||||| ||||||||| Sbjct 26074 TCTTTATTAGGTATTATCAC--TGGCATTCAACCTAAACGGTTTC 26032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595730272784000