Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq34118 170 2e-37 seq33222 140 4e-28 seq34317 134 2e-26 seq33604 89.7 6e-13 >seq34118 Length=323312 Score = 170 bits (188), Expect = 2e-37 Identities = 219/302 (73%), Gaps = 0/302 (0%) Strand=Plus/Minus Query 171018 GTGTTCCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTT 171077 || ||| | || ||||| || || ||||| |||||||||| || ||| ||||| || Sbjct 7059 GTATTCTTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTA 7000 Query 171078 GCAGCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCA 171137 ||| | || || || | | | ||||| | ||||| || || || |||||| || | ||| Sbjct 6999 GCAACTATATTTCGATCCATCCTCTTTTTTCAAGGGTTTCATAATTGGACATTGTACCCA 6940 Query 171138 TTTCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGT 171197 |||||||||||||| |||| ||| | | ||| ||| ||||| | || ||||||||| Sbjct 6939 TTTCATATGATGGGAGTTGTCGGTGTATTGGGCACTGCCTTGCTATGCGCTATTCATGGT 6880 Query 171198 GTTACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTT 171257 | ||| ||||| |||||||| | |||||| |||||| ||||| || || || ||| Sbjct 6879 GCTACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACATTCTGTGCTTTT 6820 Query 171258 GACACGACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAG 171317 | | ||||| ||||| || ||||| ||| | |||||||| | || ||||| || Sbjct 6819 AAGCCAACTCAATCTGAAGAAACTTATTCAATGATTACTGCTAACCACTTTTGGTCCCAA 6760 Query 171318 AT 171319 || Sbjct 6759 AT 6758 >seq33222 Length=111615 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171069 TTTGGAGTTGCAGCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACA 171128 ||||| || ||||| || || || ||| | |||| | ||||| || || || |||||| Sbjct 60571 TTTGGTGTAGCAGCTATATTTCGATTCATCATCTTTTTTCAAGGGTTTCATAATTGGACA 60512 Query 171129 CTGAATCCATTTCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCA 171188 |||| ||||||||||||||||| ||||| ||| | | || | | | ||||| | | Sbjct 60511 TTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTCCCTTGCTATGCACT 60452 Query 171189 ATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTT 171248 |||||||||| ||| |||| |||||||| | ||||||||||||| ||||| || || Sbjct 60451 ATTCATGGTGCTACTATAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTC 60392 Query 171249 AAGGCATTTGACACGACTCAGGAGGAAGAGACATATTCTATGGTCAC 171295 || ||| || | ||||| ||||| || ||||| ||||| || Sbjct 60391 CGCGCTTTTAACCCAACTCAATCTGAAGAAACTTATTCAATGGTTAC 60345 >seq34317 Length=297777 Score = 134 bits (148), Expect = 2e-26 Identities = 144/189 (76%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 170057 CACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTG 170116 || ||||| || |||| ||||||||||||| ||| ||||||||||| ||||| | Sbjct 200229 CATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTA 200288 Query 170117 CACTTCTTCCTCGCAGCATGGCCTGT-----TGTTGGCATCTGGTTCACCGCTCTTGGTG 170171 ||||||||| | | || |||||||| || || |||||||||| |||| | ||| Sbjct 200289 CACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCA-CGCTTTAGGTA 200347 Query 170172 TCTCCACGATGGCGTTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTC 170231 || || ||||| |||||||| ||||||||||| |||||||| ||| | | ||| ||| Sbjct 200348 TCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGATAGTC 200407 Query 170232 AGGGTCGTG 170240 | ||||||| Sbjct 200408 AAGGTCGTG 200416 >seq33604 Length=95044 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 169705 CTATCGTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGC 169764 ||||| ||||||||||||||||||||| |||||| ||||| ||||| ||||| || || Sbjct 23257 CTATCATCTGGGTATGCGCCCTTGGATTGTTGTTGCATACTCAGCTCCTGTTGCAGCTGC 23316 Query 169765 CTCCGCTGTTTTCCTGGTCTACCC 169788 |||| |||||| || ||||||| Sbjct 23317 TACCGCAGTTTTCTTGATCTACCC 23340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591625448048000