Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1027 107 4e-18 seq807 104 5e-17 seq357 104 5e-17 seq70 104 5e-17 seq596 98.7 2e-15 seq131 98.7 2e-15 seq54 98.7 2e-15 seq407 95.1 3e-14 seq229 95.1 3e-14 >seq1027 Length=3367805 Score = 107 bits (118), Expect = 4e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||||||||||||||||||||||||| || || |||| || |||||||||||||||| Sbjct 326255 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 326196 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 326195 GCCCCACGGTGGGC 326182 >seq807 Length=2915068 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 2458167 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2458226 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2458227 CCCACGGTGGGC 2458238 >seq357 Length=461249 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 218339 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 218398 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 218399 CCCACGGTGGGC 218410 >seq70 Length=3714297 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 1979854 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1979913 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1979914 CCCACGGTGGGC 1979925 >seq596 Length=4721113 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 3761239 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3761298 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 3761299 GCCACGGTGGGC 3761310 >seq131 Length=2543905 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 1170497 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGT 1170556 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1170557 CCCACGGTGGGC 1170568 >seq54 Length=3626826 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 176072 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 176131 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 176132 CCCACGGTGGGC 176143 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2164165 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2164106 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2164105 CCCACGGTGGGC 2164094 >seq407 Length=2957635 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||||||||||| || || || |||| || |||||||||||||||||| Sbjct 1859999 GCCCGTCTAGCTCAGTCGGTAGAGTGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1860058 Query 165770 CCCACGATGGGC 165781 |||||| |||| Sbjct 1860059 CCCACGGCGGGC 1860070 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 || ||||||||||||||||||||| || || || |||| || |||||||||||||||||| Sbjct 1860135 GCTCGTCTAGCTCAGTCGGTAGAGTGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1860194 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1860195 CCCACGGTGGGC 1860206 >seq229 Length=2021663 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||||||| |||||| || || ||| || |||||||||||||||||| Sbjct 582946 GCCCGTCTAGCTCAGTCGGTTGAGCGCAAGGCTCTTACCCTTGTGGTCGTGGGTTCGAGC 583005 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 583006 CCCACGGTGGGC 583017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057742354499120