Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq33 127 2e-24 >seq33 Length=1871104 Score = 127 bits (140), Expect = 2e-24 Identities = 383/582 (66%), Gaps = 17/582 (3%) Strand=Plus/Plus Query 16964 CATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAAC 17023 || ||||||||||| || || |||||||||| ||| | |||||||| || || || Sbjct 634290 CACGCGAAATCGCAGTGCAAACCCTCGTCTCGCGAGATCAACTCGTTAGAGAAAGTTAAT 634349 Query 17024 CCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAAT 17083 || |||||| || || || |||| ||||||||| ||| || ||||| || ||| Sbjct 634350 CCCGGCATCAACCCGCGCTTTTTTAGCCAAAATATGGCGCAAAAACTTCCAGAGAAAAAT 634409 Query 17084 ATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGA 17143 || ||||| ||| ||||||| |||| | || || ||| | | | | | || || Sbjct 634410 ATCCCCTCCACGCATGCAAAAGCGACAAGTCTCTCAGCGAAAGACTCCGATCCGT--CG- 634466 Query 17144 ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTA 17203 |||||| || ||||||| || |||| | ||| | || || || || | | Sbjct 634467 ATCCATCTCAAGGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTCTCGATCGCGTGA 634526 Query 17204 AATAATTTCTCTTTTTCCTGTAGGTCGA-----TTATATACGTATCGATGAGTAGGCTGT 17258 ||||| || || ||| | |||||| | ||||| || || | | || || | Sbjct 634527 AATAA--TCGATTCTTC---TCGGTCGAATCTTTGATATAAGTCTCCAGTAAAAGACTAT 634581 Query 17259 ACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTCC 17317 |||| || ||||| || ||||| || || || ||||| || || |||||| || || || Sbjct 634582 ACATCTCAGAGTGAATATTCTCAATCGCGATTTGAAAGCCATAGAAAGCA-CGAGCCTCA 634640 Query 17318 GCTATTTGAACTTCC-ACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCT 17376 | | ||| || ||| | || || || | || ||||||||| |||||||| || Sbjct 634641 GAGACTTGGACCTCCTTCATA-AAACGACCGGCAAGATTTTCGAGAACGATGCCATCAGA 634699 Query 17377 CGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCG 17436 ||||| || || || | | ||| ||||| | ||| || || | || || | Sbjct 634700 GGCGGCAAAGAAGGCAAGGACATGAGATATGAAGTGTTTCTCATCGGAGGTTAGGGCCTC 634759 Query 17437 CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGC 17496 ||| | | ||||| |||| ||| || || || | |||||||| ||| | || Sbjct 634760 CCATTGGCGGAGATCTTGAGATAGATCGACCTCCTCTGCAGTCCAAAAGGAGGCCTCGGC 634819 Query 17497 CTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 || || ||||| | ||| || | |||||| || ||||| Sbjct 634820 TTTCTTGTACATTTCCCATATCTGTGGGTATTGGATTGGGAA 634861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517506628816320