Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq33 192 7e-44 seq304 114 2e-20 seq241 114 2e-20 >seq33 Length=1871104 Score = 192 bits (212), Expect = 7e-44 Identities = 408/601 (68%), Gaps = 6/601 (1%) Strand=Plus/Plus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 ||| || |||||||||||||| | ||||||||||| || || ||||| || || || Sbjct 634286 CAAGCACGCGAAATCGCAGTGCAAACCCTCGTCTCGCGAGATCAACTCGTTAGAGAAAGT 634345 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAA 24249 | ||| ||||| | || |||||||| ||||||||||||| |||||| | ||||| | Sbjct 634346 TAATCCCGGCATCAACCCGCGCTTTTTTAGCCAAAATATGG-CGCAAAAACTTCCAGAGA 634404 Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC-CGGCGCTGTCA 24308 | || || || || || ||||| || | |||||| || | || | || | | Sbjct 634405 AAAATATCCCCTCCACGCATGCAAAAGCGACAAGTCTCTCAGCGAAAGACTCCGATC-CG 634463 Query 24309 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCA 24368 | ||||| | ||||| || ||||| || |||||||| | ||||| || || Sbjct 634464 TCGATCCATCTCAAGGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTCTCGATCGCG 634523 Query 24369 TTAAAGAGATAGtttttt-tCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 24427 | ||| | || | || || || | |||||| | ||| || || | ||||||||||| Sbjct 634524 TGAAATA-ATCGATTCTTCTCGGTCGAATCTTTGATATAAGTCTCCAGTAAAAGACTATA 634582 Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 24487 ||| || || ||||| || ||||| || |||||||| || |||||| | |||||| | Sbjct 634583 CATCTCAGAGTGAATATTCTCAATCGCGATTTGAAAGCCATAGAAAGCACGAGCCTCAGA 634642 Query 24488 AATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 24547 | || || || | ||| || | || | |||||| || || || ||| ||| Sbjct 634643 GACTTGGACCTCCTTCATAAAACGACCGGCAAGATTTTCGAGAACGATGCCATCAGAGGC 634702 Query 24548 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 24607 ||||| || || | ||||| ||| || | ||| || || | ||||| | ||| Sbjct 634703 GGCAAAGAAGGCAAGGACATGAGATATGAAGTGTTTCTCATCGGAGGTTAGGGCCTCCCA 634762 Query 24608 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 24667 | || ||||| ||||| ||| || || || | |||||||| || ||||| || || Sbjct 634763 TTGGCGGAGATCTTGAGATAGATCGACCTCCTCTGCAGTCCAAAAGGAGGCCTCGGCTTT 634822 Query 24668 TTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATT 24727 || ||||| | ||| || | | ||||| ||||| || || |||| || ||| || Sbjct 634823 CTTGTACATTTCCCATATCTGTGGGTATTGGATTGGGAACATGCAGAATCGATCTGGGTT 634882 Query 24728 T 24728 | Sbjct 634883 T 634883 >seq304 Length=2135540 Score = 114 bits (126), Expect = 2e-20 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 ||||| ||||| || | ||| |||||||| || || |||||| | | ||| | | || Sbjct 1419391 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAACCATCTCTGAGACATCAAATGA 1419450 Query 54485 TACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 54543 || || | ||||||||| || ||||| | ||| |||||||| || || || | ||| | Sbjct 1419451 TATGTTTTGATAGCTGAATCAATATCATCCTTG-TGAATTCCAACAGCAACCCTCATCAG 1419509 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA--TTTTCAGCAAGTAGGATTTTTCC 54601 |||||||||||| || || || | ||| | || | |||| || | |||||| ||||| Sbjct 1419510 CATGTGCTGAGGCCTCTCTAC-AACTTTTCCTTGAACTTTTAAG-AGGTAGGACCTTTCC 1419567 Query 54602 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 | ||| || || ||||| || | || ||||||||| || ||||| || Sbjct 1419568 AGAGTCTTGAACCCAAAGTAATCATAGTCAAAGTCTCGATCATAAATGAT 1419617 Score = 102 bits (112), Expect = 1e-16 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 54175 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 54234 || |||| |||||| ||||| | || | || || | |||| | || | ||||||||| Sbjct 1419044 CCTTTTGCCTCCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAACATTGG 1419103 Query 54235 AATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT 54294 || ||||||||| |||| ||||| || || |||||||| || |||||||||| || Sbjct 1419104 AACAATACCATTAGATGTTCCATTTGTTCCACGAATATAGCTGCCTGTGGCACGAATGTT 1419163 Query 54295 ACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 54354 || || | ||| || || || || ||| || | || || ||||| || Sbjct 1419164 GTGAACAGAGACACCAATTCCTCCAGCTGATTTGCTAATGACAGCACACTCCTTTAAAGT 1419223 Query 54355 ATCATAGATGCCCTCTATACTATCATCCATCATG 54388 |||||| ||||| || ||||||||||| ||||| Sbjct 1419224 ATCATATATGCCTTCAATACTATCATCTTTCATG 1419257 >seq241 Length=1151104 Score = 114 bits (126), Expect = 2e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 |||||| ||||| | ||| | ||| |||| |||| | |||| | |||||||||||| || Sbjct 845254 TCCTCCATGATCAACGTAGCGAGCAGTGTCATTAAACACTCGAAGCATTGGAATAATGCC 845313 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 |||||| | ||||| ||||| | || || || ||| | |||||||||||| | || Sbjct 845314 ATTGGAAGTCCCATTTGTCCCACAAATGTAACTGCCAGTAGCACGAATATTATGGACAGA 845373 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 || || || || || || | || || | || || ||| || |||||| | || Sbjct 845374 AAGGCCAATTCCTCCAGCTAACTTGCTAATAACAGCACACTCTTTCAAAGTATCAAAAAT 845433 Query 54364 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 54406 ||||| || |||||||| ||||| | |||||||||||| Sbjct 845434 TCCCTCAATGCTATCATCTTTCATGCACACAAGAAAACAGCTA 845476 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/155 (74%), Gaps = 6/155 (4%) Strand=Plus/Plus Query 53942 TACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 54001 |||||| |||||| || || |||||| || |||| |||||| ||||| || || Sbjct 844734 TACAATTTTTCAAATTCTTCACCCCAACAATCAGCCAAACCAGGAGCTTCATTGGGGCAA 844793 Query 54002 ATCAACGACCACTCTCCGTCATCCTTC--ACTCGTTTCATAAAGAGATCAGGAATCCAAA 54059 | || ||||| | ||| |||| |||| || ||||||||||||||||||||||| Sbjct 844794 AATAAAGACCAGCTGCTATCA--CTTCGGACTCTTTCCATAAAGAGATCAGGAATCCAAA 844851 Query 54060 GAGCTATA-AATAGATCTCTGGTTCTATGTTCCTC 54093 |||| ||| |||| |||||| | || | |||| || Sbjct 844852 GAGC-ATAGAATAAATCTCTAGCTCGACGTTCTTC 844885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593676892763520