Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq271 104 2e-17 seq1476 95.1 1e-14 seq813 84.2 2e-11 seq54 82.4 7e-11 >seq271 Length=609135 Score = 104 bits (114), Expect = 2e-17 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 |||||||||||| | || ||||| || |||||| |||||||| | |||| | || ||| Sbjct 324178 GATCAACAAAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACTCTTGCAGAT 324119 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTT-ACGATTACGAGGAGG 29188 |||||||| ||||||||||| ||||||||| |||| || | | ||| ||||||| Sbjct 324118 TACAATATCCAGAAGGAATCAACTCTTCACTTGGTTTTGAGGCTTA-GAGGAGG 324066 >seq1476 Length=5289327 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 ||| || || || || ||||| || || || |||||||||||| | |||| ||||||| Sbjct 642863 AGACCAGCAGAGGCTGATCTTCGCCGGTAAGCAACTGGAAGATGGCCGAACTTTGGCCGA 642804 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||||||||||||||||||||| ||||| ||| | ||| Sbjct 642803 TTACAATATTCAGAAGGAATCCACTCTCCACCTTGTG 642767 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||||||| | || ||| || || | ||||||||||| || ||||| || ||| Sbjct 643567 GACAAAGAAGGTATCCCGCCAGACCAGCAGCGTCTTATCTTTGCCGGGAAACAGCTCGAA 643508 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | ||| |||||||||||||||| |||||||| || || |||||| | || | Sbjct 643507 GATGGCCGTACTTTGGCCGATTACAATATCCAGAAGGAGTCCACCCTTCACCTCGTCCTC 643448 Query 29175 CGATTACGAGGAGG 29188 || | || ||||| Sbjct 643447 CGTCTCCGTGGAGG 643434 >seq813 Length=767751 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| ||||| | || ||||| || ||| | || ||||| ||||| ||| ||||| Sbjct 436420 GATAAGGAAGGCATCCCTCCTGATCAGCAGAGATTGATTTTTGCTGGCAAGCAATTGGAA 436361 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||| | |||| | || ||||| || |||||||||||||| || |||||| |||| Sbjct 436360 GATGGCCGAACTCTTGCTGATTATAACATTCAGAAGGAATCAACACTTCACCTGGT 436305 >seq54 Length=3626826 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 ||||| || ||| | || ||| | ||||| ||| ||||||||| | |||| | || ||| Sbjct 3012188 GATCAGCAGAGATTGATTTTTCCTGGCAAGCAATTGGAAGATTGCCGAACTGTTGCTGAT 3012247 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 || || |||||||||||||| || |||||| |||| Sbjct 3012248 TATAACATTCAGAAGGAATCAACACTTCACCTGGT 3012282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428304552641720