Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq271 104 2e-17 seq1476 86.0 5e-12 seq813 84.2 2e-11 seq54 82.4 6e-11 >seq271 Length=609135 Score = 104 bits (114), Expect = 2e-17 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 |||||||||||| | || ||||| || ||||||||||||||| | |||| | || ||| Sbjct 324178 GATCAACAAAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACTCTTGCAGAT 324119 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT-ACGATTACGAGGAGG 25261 |||||||| || |||||||| ||||||||| |||| || | | ||| ||||||| Sbjct 324118 TACAATATCCAGAAGGAATCAACTCTTCACTTGGTTTTGAGGCTTA-GAGGAGG 324066 >seq1476 Length=5289327 Score = 86.0 bits (94), Expect = 5e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 25148 AGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGA 25207 ||| || || || || ||||| || || || ||| |||||||| | |||| ||||||| Sbjct 642863 AGACCAGCAGAGGCTGATCTTCGCCGGTAAGCAACTGGAAGATGGCCGAACTTTGGCCGA 642804 Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCACATGGTG 25244 |||||||||||| |||||||| ||||| ||| | ||| Sbjct 642803 TTACAATATTCAGAAGGAATCCACTCTCCACCTTGTG 642767 >seq813 Length=767751 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| ||||| | || ||||| || ||| | || ||||| ||||| ||||||||| Sbjct 436420 GATAAGGAAGGCATCCCTCCTGATCAGCAGAGATTGATTTTTGCTGGCAAGCAATTGGAA 436361 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||| | |||| | || ||||| || ||||| |||||||| || |||||| |||| Sbjct 436360 GATGGCCGAACTCTTGCTGATTATAACATTCAGAAGGAATCAACACTTCACCTGGT 436305 >seq54 Length=3626826 Score = 82.4 bits (90), Expect = 6e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 ||||| || ||| | || ||| | ||||| ||||||||||||| | |||| | || ||| Sbjct 3012188 GATCAGCAGAGATTGATTTTTCCTGGCAAGCAATTGGAAGATTGCCGAACTGTTGCTGAT 3012247 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 || || ||||| |||||||| || |||||| |||| Sbjct 3012248 TATAACATTCAGAAGGAATCAACACTTCACCTGGT 3012282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410766640325936