Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq169 156 6e-33 seq167 127 3e-24 seq1476 109 8e-19 seq1027 109 8e-19 seq271 102 1e-16 seq229 87.8 3e-12 >seq169 Length=810068 Score = 156 bits (172), Expect = 6e-33 Identities = 154/199 (77%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | |||||| | || || || || || ||| ||||| | || Sbjct 364386 AATGCAGATTTTTGTTAAGACATTGACCGGAAAGACCATCACTTTAGAGGTGGAGAGTTC 364445 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||||||| |||| |||| |||||||| || || ||||| || ||||||||||| Sbjct 364446 TGATACAATTGATAATGTAAAGGCTAAAATTCAGGACAAGGAAGGAATTCCACCTGATCA 364505 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||||||||| || || ||||| |||||| | || ||| | | ||||||||| Sbjct 364506 GCAGAGGCTTATTTTTGCTGGGAAGCAATTGGAGGATGGCCGTACACTTGCAGATTATAA 364565 Query 124718 TATTCAAAAAGAATCAACT 124736 |||||| |||||||||||| Sbjct 364566 TATTCAGAAAGAATCAACT 364584 Score = 152 bits (168), Expect = 8e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAAA 124597 ||||| || ||| | ||||| || || ||||| ||||||||| | ||| | ||| || | Sbjct 364159 ATGCAGATTTTTGTGAAGACTCTCACCGGCAAGACTATAACTTTGGAGGTGGAAAGCTCA 364218 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| |||| | ||| ||||||||||| || |||||||| |||||||| || Sbjct 364219 -GATACAATTGATAATGTCAAAGCCAAAATTCAAGACAAGGAAGGTATTCCACCTGACCA 364277 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || | ||||| || ||||| || |||||||| | || || | | |||||||| Sbjct 364278 GCAGCGGTTGATTTTCGCCGGAAAGCAGCTAGAGGATGGCCGGACTCTTGCCGATTATAA 364337 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| ||| ||||| ||||| | || | || ||||| || Sbjct 364338 CATCCAAAAAGAATCCACTCTGCATCTGGTTCTCCGGCTCCGCGGTGGAAT 364388 Score = 107 bits (118), Expect = 3e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | || || || || ||||||||||||||| | ||| | || ||| Sbjct 363931 ATGCAAATCTTTGTTAAAACCCTCACCGGCAAAACTATAACTCTCGAGGTCGAGAGC-TC 363989 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| || | || || ||||| ||||| ||||| || || ||||| || Sbjct 363990 CGACACAATCGACAACGTTAAGGCTAAGATTCAGGATAAGGAAGGAATTCCTCCTGACCA 364049 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||||| ||||| || || || || | |||||| | || || | | ||||| || Sbjct 364050 GCAAAGGCTGATTTTCGCCGGTAAGCAGCTTGAGGATGGCCGTACCCTCGCCGATTACAA 364109 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| ||||| ||||| ||| | ||| | ||| | ||| | |||| || || Sbjct 364110 TATACAAAAGGAATCCACTCTTCATCTTGTTCTTCGTCTGAGAGGAGGCAT 364160 >seq167 Length=3484751 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | ||||| || || ||||| ||||| ||| | || |||| Sbjct 1287939 ATGCAGATATTTGTCAAGACTCTCACTGGCAAGACTATCACTTTGGAAGTTGAGAGTTCG 1287998 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || |||| | || ||||| ||||| || || ||||| ||||| ||||| Sbjct 1287999 GATACCATCGATAATGTCAAGGCCAAAATACAAGACAAGGAGGGTATTCCACCAGATCAG 1288058 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | |||||||| || ||||| |||||||| |||| ||| | | || |||||| Sbjct 1288059 CAAAGATTGATTTTTGCTGGGAAACAGCTAGAGGATGGTCGCACACTTGCTGACTATAAT 1288118 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| ||||| || || | || ||||| | || | || |||||||| Sbjct 1288119 ATTCAGAAAGAGTCTACGCTTCACTTGGTGCTCCGACTCCGTGGTGGTAT 1288168 Score = 113 bits (124), Expect = 7e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || | ||||| | ||||||||||| || ||| | || | || ||| Sbjct 2202951 ATGCAGATCTTCGTTAAGACTTTGACAGGCAAAACCATTACTCTTGAAGTCGAGAGCTC- 2202893 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| || |||| | || || || ||||| || ||||| || ||||| || || Sbjct 2202892 TGATACCATCGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCGGACCA 2202833 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || | || || || ||||||||| | || || | |||| | | |||||||| Sbjct 2202832 GCAGAGATTGATCTTCGCTGGAAAACAACTCGAAGACGGAAGAACCCTTGCCGATTATAA 2202773 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| || ||||| || ||||||||||| | ||||| ||||| ||||| Sbjct 2202772 TATTCAGAAGGAATCCACACTGCATTTGGTTCTCCGTTTGCGAGGAGGTAT 2202722 Score = 107 bits (118), Expect = 3e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || || || || || || || | ||| | || ||| Sbjct 1288395 ATGCAGATTTTTGTGAAGACCCTTACTGGAAAGACAATCACCTTGGAGGTAGAGAGCTC- 1288453 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| |||||| |||| | || || || |||||||| || || || ||||| || || Sbjct 1288454 TGACACAATTGATAATGTCAAGGCCAAGATCCAAGATAAGGAGGGGATCCCACCAGACCA 1288513 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | || ||||| || || || | || ||| | | || | | ||||||||| Sbjct 1288514 GCAGAGGTTGATCTTTGCTGGGAAGCAGCTTGAAGATGGAAGGACTCTTGCAGATTATAA 1288573 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| |||||||| ||| |||||||||| | ||| | || ||||| || Sbjct 1288574 TATTCAGAAAGAATCTACTCTGCATTTGGTGCTTCGTCTGCGTGGTGGAAT 1288624 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | || || |||| ||||| || || || | ||| |||| ||| Sbjct 1288167 ATGCAAATCTTTGTGAAAACCTTAACTGGCAAGACCATCACCTTGGAGGTTGAGAGCTC- 1288225 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | ||| || || ||||| || || ||||| || || || || Sbjct 1288226 TGACACCATTGACAATGTGAAAGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCA 1288285 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||| ||||| || || || | |||||| | || || | | || || || Sbjct 1288286 GCAGAGGCTTATCTTTGCTGGTAAGCAGCTCGAGGATGGGCGCACCCTTGCTGACTACAA 1288345 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || || ||||||||||| | ||| | || ||||| || Sbjct 1288346 CATTCAGAAGGAGTCCACCTTGCATTTGGTGCTTCGTCTCCGTGGTGGCAT 1288396 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || || || || ||||| || ||||| || || || || | || || || ||||| Sbjct 2202639 AAGATCCAGGACAAGGAAGGAATTCCACCAGACCAGCAGCGGTTGATCTTCGCTGGAAAG 2202580 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||| | || || | ||||| | | ||||||||||| || || ||||| ||| ||||| Sbjct 2202579 CAACTCGAAGACGGAAGAACACTCGCCGATTATAATATCCAGAAGGAATCGACTCTGCAT 2202520 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 |||| | |||||| |||| ||||| Sbjct 2202519 CTGGTCCTCCGTTTAAGAGGAGGTAT 2202494 >seq1476 Length=5289327 Score = 109 bits (120), Expect = 8e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||| || | ||||| || ||||| || ||||| ||| | || | || |||| Sbjct 642749 AATGCAAATCTTCGTCAAGACCCTGACAGGGAAGACTATCACTCTGGAAGTGGAGAGCAG 642690 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||||||| |||| | || |||||| || ||||| ||||| || || || |||| Sbjct 642689 -TGATACAATCGATAATGTGAAGGCGAAAATCCAGGATAAGGAAGGGATTCCTCCAGATC 642631 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | |||||||| || ||||| || || || || ||||| | | || | | || || | Sbjct 642630 AGCAAAGGCTGATCTTTGCTGGGAAGCAGTTGGAGGACGGAAGGACTCTGGCCGACTACA 642571 Query 124717 ATATTCAAAAAGAATCAAC 124735 |||| || ||||||||||| Sbjct 642570 ATATCCAGAAAGAATCAAC 642552 Score = 86.0 bits (94), Expect = 9e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || | ||||| | || || || || || || | ||| |||| |||| Sbjct 642976 ATGCAGATTTTCGTCAAGACCTTGACTGGAAAGACCATCACCCTGGAGGTTGAGAGCAG- 642918 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | || ||||||||||| || || || || ||||| || || Sbjct 642917 TGACACTATTGATAACGTGAAGGCAAAAATTCAAGACAAGGAGGGCATCCCACCAGACCA 642858 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || || || || || ||| | || ||| | ||||| || | ||||| || Sbjct 642857 GCAGAGGCTGATCTTCGCCGGTAAGCAACTGGAAGATGGCCGAACTTTGGCCGATTACAA 642798 Query 124718 TATTCAAAAAGAATCAACT 124736 |||||| || ||||| ||| Sbjct 642797 TATTCAGAAGGAATCCACT 642779 >seq1027 Length=3367805 Score = 109 bits (120), Expect = 8e-19 Identities = 157/220 (71%), Gaps = 5/220 (2%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | |||||||| || || ||||| || || | ||| | ||| Sbjct 416835 ATGCAGATCTTTGTGAAGACACTTACTGGGAAAACCATCACACTTGAGGTGGAAAGTTCA 416776 Query 124599 GATACAATTTCTAATTTAAAA--CAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||| || ||| | ||| |||| | || ||||| ||||| || |||||||| | Sbjct 416775 GATACTATCGACAATGTGAAAGCCAGA---TCCAGGATAAGGAAGGAATCCCACCTGACC 416719 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | ||||||||||| ||||| ||||| ||| | |||||| | || ||| | | ||||| | Sbjct 416718 AGCAAAGGCTTATCTTTGCTGGAAAGCAACTTGAGGATGGCCGCACACTTGCTGATTACA 416659 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTT 124756 | || ||||| ||||| || | || ||||| | ||||| Sbjct 416658 ACATCCAAAAGGAATCCACCCTCCACTTGGTGCTTCGTTT 416619 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || ||||| || || || ||| | || | || ||| Sbjct 416380 ATGCAGATTTTTGTGAAGACCCTCACAGGGAAGACCATTACTTTGGAAGTAGAGAGCTC- 416322 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | ||| ||||||||||| || || || || || || || || Sbjct 416321 TGACACCATTGACAATGTTAAAGCCAAAATTCAAGACAAGGAGGGCATCCCCCCAGACCA 416262 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | ||||||||||| ||||| | ||||| |||| || | || ||||| Sbjct 416261 GCAGAGGTTGATTTTTGCAGGGAAACAGCTTGAGGACGGTCGTACTCATGCTGACTATAA 416202 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATT 124769 ||||| ||||| || || | || ||||| | || | || ||||| ||| Sbjct 416201 CATTCAGAAAGAGTCCACCCTCCACTTGGTGCTTCGCCTTCGTGGTGGCATT 416150 >seq271 Length=609135 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 124632 GATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAG 124691 || || ||||| || || |||||||||||||| | |||||||| || |||||||| || Sbjct 324199 GACAAGGAAGGGATCCCTCCTGATCAACAAAGATTGATTTTTGCTGGTAAACAATTGGAA 324140 Query 124692 GATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTT 124750 ||| || |||| | | |||||| ||||| || || ||||||||| | || |||||||| Sbjct 324139 GATGGTAGAACTCTTGCAGATTACAATATCCAGAAGGAATCAACTCTTCACTTGGTTTT 324081 >seq229 Length=2021663 Score = 87.8 bits (96), Expect = 3e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || ||||| || || || | ||| |||| | Sbjct 544595 ATGCAGATCTTTGTGAAGACCCTTACTGGCAAGACCATTACCTTGGAGGTTGAGAGTTCT 544536 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| |||| | || ||||| ||||| || ||||| || ||||||||||| Sbjct 544535 GACACTATTGATAATGTTAAGGCTAAAATCCAAGACAAGGAAGGCATCCCACCTGATCAG 544476 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | |||||||| || || || | |||||| | | || | | ||||| ||| Sbjct 544475 CAGAGATTGATTTTTGCTGGGAAGCAGCTTGAGGATGGGAGGACCCTTGCCGATTACAAT 544416 Query 124719 ATTCAAAAAGAATCAACTTTGCA 124741 || || || || || || ||||| Sbjct 544415 ATCCAGAAGGAGTCTACCTTGCA 544393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755399114163200