Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq271 131 2e-25 seq813 113 7e-20 seq167 105 1e-17 seq169 93.3 6e-14 seq54 91.5 2e-13 seq100 87.8 3e-12 seq1027 86.0 9e-12 >seq271 Length=609135 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| |||||||| || || ||||| || | ||| ||||| || ||||| |||||| Sbjct 324063 GTTCCTCCTCTAAGCCTCAAAACCAAGTGAAGAGTTGATTCCTTCTGGATATTGTAATCT 324122 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||||||| | ||| || |||||||| |||||||||||||||||||| ||||| ||| Sbjct 324123 GCAAGAGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCAGGA 324182 Query 146168 GGAATTCCTTCTTTATC 146184 || || ||||| || || Sbjct 324183 GGGATCCCTTCCTTGTC 324199 >seq813 Length=767751 Score = 113 bits (124), Expect = 7e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| |||||||| || | |||| || | || ||||| || || |||||||| Sbjct 436284 GTTCCTCCTCTAAGCCTCAGAACCAGGTGAAGTGTTGATTCCTTCTGAATGTTATAATCA 436343 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||||| || ||| || ||||| || ||||||||||||||||| |||||||| ||| Sbjct 436344 GCAAGAGTTCGGCCATCTTCCAATTGCTTGCCAGCAAAAATCAATCTCTGCTGATCAGGA 436403 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||| ||||| || Sbjct 436404 GGGATGCCTTCCTTATCCTG 436423 >seq167 Length=3484751 Score = 105 bits (116), Expect = 1e-17 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | || ||||| || ||||||||||| | ||| ||||| | || || Sbjct 2202743 ACCAAATGCAGTGTGGATTCCTTCTGAATATTATAATCGGCAAGGGTTCTTCCGTCTTCG 2202802 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 | |||||||||||| || |||||||| ||||| ||||| ||||||||||| || ||||| Sbjct 2202803 AGTTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCCGGTGGAATTCCTTCCTTGTCTTGG 2202862 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 ||||| || || || ||||| || || || ||||| Sbjct 2202863 ATCTTGGCCTTGACATTATCGATGGTATCAGAGCTCTCGACTTCAAGAGTAATGGTTTTG 2202922 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||| || || |||| ||| || ||||| Sbjct 2202923 CCTGTCAAAGTCTTAACGAAGATCTGCAT 2202951 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | |||||||||||| ||||||||||||| |||||| || | ||| || Sbjct 1288603 ACCAAATGCAGAGTAGATTCTTTCTGAATATTATAATCTGCAAGAGTCCTTCCATCTTCA 1288544 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | || || |||||||| ||||| || ||||| || || || || || || |||||||| Sbjct 1288543 AGCTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTATCTTG 1288485 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||| | ||||| || | ||||| ||||| |||||||| || | | Sbjct 1288165 CCACCACGGAGTCGGAGCACCAAGTGAAGCGTAGACTCTTTCTGAATATTATAGTCAGCA 1288106 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| |||| ||||| |||||||||||||||||||||||||| || ||| Sbjct 1288105 AGTGTGCGACCATCCTCTAGCTGTTTCCCAGCAAAAATCAATCTTTGCTGATCTGGTGGA 1288046 Query 146171 ATTCCTTCTTTATCTTG 146187 || || || || ||||| Sbjct 1288045 ATACCCTCCTTGTCTTG 1288029 >seq169 Length=810068 Score = 93.3 bits (102), Expect = 6e-14 Identities = 135/199 (68%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 146080 AGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCC 146139 ||| |||||||| ||||||||||||| ||| || | || ||| || ||||| || || Sbjct 364584 AGTTGATTCTTTCTGAATATTATAATCTGCAAGTGTACGGCCATCCTCCAATTGCTTCCC 364525 Query 146140 AGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNN 146199 ||||||||| | || |||||||| || ||||||||||| || || || Sbjct 364524 AGCAAAAATAAGCCTCTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGAATTTTAGCCTT 364465 Query 146200 NNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGT 146259 ||||| ||||| || || |||| ||||| || || || || ||||| Sbjct 364464 TACATTATCAATTGTATCAGAACTCTCCACCTCTAAAGTGATGGTCTTTCCGGTCAATGT 364405 Query 146260 TTTAATGAATATTTGCATT 146278 |||| || || |||||| Sbjct 364404 CTTAACAAAAATCTGCATT 364386 >seq54 Length=3626826 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/140 (75%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| |||||||| || | |||| || | || ||||| || || |||||||| Sbjct 3012303 GTTCCTCCTCTAAGCCTCAGAACCAGGTGAAGTGTTGATTCCTTCTGAATGTTATAATCA 3012244 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | || ||||| || ||| || ||||| || |||| |||||||||||| |||||||| | | Sbjct 3012243 GCAACAGTTCGGCAATCTTCCAATTGCTTGCCAGGAAAAATCAATCTCTGCTGATCAGAA 3012184 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || | | |||| ||||| || Sbjct 3012183 GGGA-TGCTTCCTTATCCTG 3012165 >seq100 Length=1654266 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/140 (75%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGA-TTCTTTAGATATATTATAATCT 146107 ||||||||||||| | | ||||| || | || || | |||| || || ||||| || Sbjct 547027 TTCCACCTCTAAGACGGAGAACCAAGTGGAGGGTTGACTCCTTTTGA-ATGTTATAGTCC 546969 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||| || | || ||| || || ||||| |||||||| ||||| || |||||||| || Sbjct 546968 GCAAGGGTACGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAACCTCTGCTGATCAGGG 546909 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| ||||| || || || Sbjct 546908 GGAATCCCTTCCTTGTCCTG 546889 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/140 (75%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGA-TTCTTTAGATATATTATAATCT 146107 ||||||||||||| | | ||||| || | || || | |||| || || ||||| || Sbjct 554096 TTCCACCTCTAAGACGGAGAACCAAGTGGAGGGTTGACTCCTTTTGA-ATGTTATAGTCC 554038 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||| || | || ||| || || ||||| |||||||| ||||| || |||||||| || Sbjct 554037 GCAAGGGTACGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAACCTCTGCTGATCAGGG 553978 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| ||||| || || || Sbjct 553977 GGAATCCCTTCCTTGTCCTG 553958 >seq1027 Length=3367805 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| |||| | ||||| || | || ||||| || ||||| || || | | Sbjct 416382 CCACCTCGGAGTCGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATATTGTAGTCAGCA 416441 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | || ||| |||| ||||||||||||||||||| || ||||| || || ||| Sbjct 416442 AGTGTGCGGCCATCCTCTAGCTGTTTTCCAGCAAAAATCAGCCTCTGCTGGTCGGGGGGA 416501 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| ||||| || Sbjct 416502 ATGCCTTCCTTATCCTG 416518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743470412462080