Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq33 161 9e-35 >seq33 Length=1871104 Score = 161 bits (178), Expect = 9e-35 Identities = 573/879 (65%), Gaps = 41/879 (5%) Strand=Plus/Plus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 |||||||| || || |||||||||| |||||| |||||||||||||| || |||||| Sbjct 633984 GACATAACCGAAGCCTTCTGATATTCACCAACTCTTTTTTCAAAGAAATTAGTCTTTCCT 634043 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTAT---TTATCG 16045 | ||||| || ||||| |||||||||| || | || || |||| || || Sbjct 634044 TGCAATGAGATCAGCTCCATCCAATCAAAAGGGTTAGT--CAC-ATTGTATATCTTCCCG 634100 Query 16046 CATCCCAATTCCA-ACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATC 16104 || ||||| || ||| || ||||| |||||||| || |||||||| |||| | || Sbjct 634101 CA-CCCAAGCGCACCCAACAACCTATCAGCCACAAACTCAATATACTGGCTCATCAGCTC 634159 Query 16105 ACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATT 16164 | |||||| |||| || ||| | || || || ||| | | || || | Sbjct 634160 TCGGTTCATCCCTACCAAAGCGCAAGGAAGCGCGTCGCATACAAACTCCCTCTCAATTTC 634219 Query 16165 AACCGCTTCAATGATTATATCTCTTACTACACT----ATTTAACGGAGGGTTTAA-TAAG 16219 || || ||| | ||| || ||| || || ||| ||| || || || Sbjct 634220 CACTGCATCACGCACTAT-TCCCTTCACACGCTCCTCATTCAACTTCTTCTTCAACAAAC 634278 Query 16220 TGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCG 16279 ||| | | | || || ||||| || ||||| || ||||| | || |||||| Sbjct 634279 TGT----AGAGCAAGCACGCGAAATCGCAGTGCAAACCCTCGTCTCGCGAGATCAACTCG 634334 Query 16280 TTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAAT 16339 || || || || | || ||||| | || || ||||| | ||||||||| ||| ||| Sbjct 634335 TTAGAGAAAGTTAATCCCGGCATCAACCCGCGCTTTTTTAGCCAAAATATGGCGCAAAAA 634394 Query 16340 GAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACG-- 16397 ||||| || ||||| || || || ||||| || || | || |||| || | | Sbjct 634395 CTTCCAGAGAAAAATATCCCCTCCACGCATGCAAAAGCGACAAGTCTCTCAGCGAAAGAC 634454 Query 16398 TTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCA 16457 | | || | || |||||| | ||||| | || |||| ||||| | Sbjct 634455 TCCGAT-----CCGTCGATCCATCTCAAGGCCCACTCAGCCTTTTTAGCCACACAAGGAA 634509 Query 16458 TGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTA 16517 | |||| || || | |||||| ||| || || | |||| |||||||| || | Sbjct 634510 CGGTCTCGATCGCGTGAAATAATCGATTCTTCTCGGTCGAATCTTTGATATAAGTCTCCA 634569 Query 16518 TTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAG 16576 || | ||||||||| || || ||||||||||| || || || ||||| ||||| |||| Sbjct 634570 GTAAAAGACTATACATCTCAGAGTGAATATTCTCAATCGCGATTTGAAAGCCATAGAAAG 634629 Query 16577 CATCTAGCTTCGGATATTTG----TACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTT 16632 || | ||| || || | ||| | ||||| ||||| | | || | |||||| Sbjct 634630 CA-CGAGCCTCAGAGACTTGGACCTCCTTCA---TAAAA-CGACCGGCAAGATTTTCGAG 634684 Query 16633 AACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTT 16692 ||| || ||||| || ||||| || ||||| | || || || | ||| || Sbjct 634685 AACGATGCCATCAGAGGCGGCAAAGAAGGCAAGGACATGAGATATGAAGTGTTTCTC--- 634741 Query 16693 ATCTGA---AAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGT 16749 ||| || || ||| | | ||||| |||| ||||||||| ||| |||| Sbjct 634742 ATCGGAGGTTAGGGCCTCCCATTGGCGGAGATCTTGAGATAGATCGACCTCCTCTGCAGT 634801 Query 16750 CCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATAT 16788 |||||| || || | || || || ||||||| |||||| Sbjct 634802 CCAAAAGGAGGCCTCGGCTTTCTTGTACATTTCCCATAT 634840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462477172846400