Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq100 98.7 8e-16 seq813 95.1 9e-15 seq271 91.5 1e-13 seq54 87.8 1e-12 seq1476 86.0 5e-12 seq169 82.4 6e-11 >seq100 Length=1654266 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || ||||| || ||||||||||| ||||| || | || | |||| Sbjct 547010 AGAACCAAGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCCGCAAGGGTACGGCCATCT 546951 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 ||||| |||||||| ||| |||| | || || ||||| ||| | |||||||| || Sbjct 546950 TCCAACTGTTTGCCAGCAAAGATCAACCTCTGCTGATCAGGGGGAATCCCTTCCTTGTCC 546891 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||||| | || || || | ||| |||||| | || |||| ||||||| | Sbjct 546890 TGAATTT-TGGCTTTTACGTTGTCAATAGTGTCTGAGCTTTCCACCTCAAGGGTGATGGT 546832 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || | ||||| ||||| |||||||| Sbjct 546831 CTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 546799 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || ||||| || ||||||||||| ||||| || | || | |||| Sbjct 554079 AGAACCAAGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCCGCAAGGGTACGGCCATCT 554020 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 ||||| |||||||| ||| |||| | || || ||||| ||| | |||||||| || Sbjct 554019 TCCAACTGTTTGCCAGCAAAGATCAACCTCTGCTGATCAGGGGGAATCCCTTCCTTGTCC 553960 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||||| | || || || | ||| |||||| | || |||| ||||||| | Sbjct 553959 TGAATTT-TGGCTTTTACGTTGTCAATAGTGTCTGAGCTTTCCACCTCAAGGGTGATGGT 553901 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || | ||||| ||||| |||||||| Sbjct 553900 CTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 553868 >seq813 Length=767751 Score = 95.1 bits (104), Expect = 9e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| | || || || |||| ||||||||||||||| || |||||||| || || || Sbjct 436286 TCCTCCTCTAAGCCTCAGAACCAGGTGAAGTGTTGATTCCTTCTGAATGTTATAATCAGC 436345 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | |||||||||||| ||||| ||| | || | ||| || ||||| || Sbjct 436346 AAGAGTTCGGCCATCTTCCAATTGCTTGCCAGCAAAAATCAATCTCTGCTGATCAGGAGG 436405 Query 18218 CACGCCTTCCTTATC 18232 | |||||||||||| Sbjct 436406 GATGCCTTCCTTATC 436420 >seq271 Length=609135 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| | || || | |||| |||||| |||||||| || || || ||||| || || Sbjct 324065 TCCTCCTCTAAGCCTCAAAACCAAGTGAAGAGTTGATTCCTTCTGGATATTGTAATCTGC 324124 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| ||| ||||||||||||||| || ||| | || | |||||||||||| || Sbjct 324125 AAGAGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCAGGAGG 324184 Query 18218 CACGCCTTCCTTATC 18232 | |||||||| || Sbjct 324185 GATCCCTTCCTTGTC 324199 >seq54 Length=3626826 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/135 (75%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| | || || || |||| ||||||||||||||| || |||||||| || || || Sbjct 3012301 TCCTCCTCTAAGCCTCAGAACCAGGTGAAGTGTTGATTCCTTCTGAATGTTATAATCAGC 3012242 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| |||||||||||||| ||||| | | | || | ||| || ||||| || Sbjct 3012241 AACAGTTCGGCAATCTTCCAATTGCTTGCCAGGAAAAATCAATCTCTGCTGATCAGAAGG 3012182 Query 18218 CACGCCTTCCTTATC 18232 | | |||||||||| Sbjct 3012181 GATG-CTTCCTTATC 3012168 >seq1476 Length=5289327 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18097 ATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGG 18156 |||| || || || | || || | |||||| ||||||||||| || || |||||||||| Sbjct 642520 ATCCACCACGCAGACGCAGGACAAGGTGAAGGGTTGATTCTTTCTGGATATTGTAGTCGG 642579 Query 18157 CCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGG 18216 ||| || | | || ||||| || || || ||| |||| || ||||| ||||| | Sbjct 642580 CCAGAGTCCTTCCGTCCTCCAACTGCTTCCCAGCAAAGATCAGCCTTTGCTGATCTGGAG 642639 Query 18217 GCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | | ||||||||||| |||| ||| || | | | || |||| | ||| Sbjct 642640 GAATCCCTTCCTTATCCTGGATTTTCGCCTTCACATTATCGATTGTATCACTGCTCTCCA 642699 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | ||||| | || || |||| || || || || ||||||||| Sbjct 642700 CTTCCAGAGTGATAGTCTTCCCTGTCAGGGTCTTGACGAAGATTTGCATT 642749 >seq169 Length=810068 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | ||| || ||||||||||| ||||| || || || || | ||| | ||| Sbjct 364598 AGCACAAGGTGGAGAGTTGATTCTTTCTGAATATTATAATCTGCAAGTGTACGGCCATCC 364539 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||||||| || || ||| | ||||| || || ||||| || | |||||||| || Sbjct 364538 TCCAATTGCTTCCCAGCAAAAATAAGCCTCTGCTGATCAGGTGGAATTCCTTCCTTGTCC 364479 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||||| ||| || | ||| || ||| ||| || | |||||| | Sbjct 364478 TGAATTTTAGCCTTTACATTATCAATTGTATCAGAACTCTCCACCTCTAAAGTGATGGTC 364419 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || ||||||||||| || |||||||| |||||| Sbjct 364418 TTTCCGGTCAATGTCTTAACAAAAATCTGCATT 364386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379316149511880