Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq33 212 8e-50 seq304 116 5e-21 seq241 96.9 4e-15 >seq33 Length=1871104 Score = 212 bits (234), Expect = 8e-50 Identities = 417/609 (68%), Gaps = 6/609 (1%) Strand=Plus/Plus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 ||| || |||||||||||||||| ||||||||||| || || |||||||| || || Sbjct 634286 CAAGCACGCGAAATCGCAGTGCAAACCCTCGTCTCGCGAGATCAACTCGTTAGAGAAAGT 634345 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 | ||| ||||| | || |||||||| ||||||||||||| || ||| || || Sbjct 634346 TAATCCCGGCATCAACCCGCGCTTTTTTAGCCAAAATATGGCGCAAAAACTTCCAGAGAA 634405 Query 33698 GAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCGCTGTCA 33755 || || || || || ||| ||||| || | ||||||||| | || | || | | Sbjct 634406 AAATATCCCCTCCAC-GCATGCAAAAGCGACAAGTCTCTCAGCGAAAGACTCCGATC-CG 634463 Query 33756 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33815 | ||||| | ||||| || ||||| || |||||||| | || || || || Sbjct 634464 TCGATCCATCTCAAGGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTCTCGATCGCG 634523 Query 33816 TTAAAGAGATAGtttttt-tCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874 | ||| | || | || || || | |||||| | |||||| || | ||||||||||| Sbjct 634524 TGAAATA-ATCGATTCTTCTCGGTCGAATCTTTGATATAAGTCTCCAGTAAAAGACTATA 634582 Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934 ||| || || ||||| || ||||| || || ||||| || |||||| | |||||| | Sbjct 634583 CATCTCAGAGTGAATATTCTCAATCGCGATTTGAAAGCCATAGAAAGCACGAGCCTCAGA 634642 Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGC 33994 | || || || | ||| || | || | |||||| || || |||||| ||| Sbjct 634643 GACTTGGACCTCCTTCATAAAACGACCGGCAAGATTTTCGAGAACGATGCCATCAGAGGC 634702 Query 33995 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 34054 ||||| || || | ||||| ||| || | ||| || || | ||||| | ||| Sbjct 634703 GGCAAAGAAGGCAAGGACATGAGATATGAAGTGTTTCTCATCGGAGGTTAGGGCCTCCCA 634762 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 | || ||||| ||||| ||| || || || | |||||||| || ||||| || || Sbjct 634763 TTGGCGGAGATCTTGAGATAGATCGACCTCCTCTGCAGTCCAAAAGGAGGCCTCGGCTTT 634822 Query 34115 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174 || ||||| | ||| || | | |||||||||||||| || |||| || ||| || Sbjct 634823 CTTGTACATTTCCCATATCTGTGGGTATTGGATTGGGAACATGCAGAATCGATCTGGGTT 634882 Query 34175 TGGTGCAAG 34183 ||| || || Sbjct 634883 TGGGGCTAG 634891 >seq304 Length=2135540 Score = 116 bits (128), Expect = 5e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 ||||| ||||| || | ||| |||||||| || || |||||| | | ||| | | || Sbjct 1419391 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAACCATCTCTGAGACATCAAATGA 1419450 Query 63723 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63781 || || | |||||||| || ||||| | ||| |||||||| || || || | ||| | Sbjct 1419451 TATGTTTTGATAGCTGAATCAATATCATCCTTG-TGAATTCCAACAGCAACCCTCATCAG 1419509 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 |||||||||||| || || |||| ||| | | ||| || | |||||| |||||| Sbjct 1419510 CATGTGCTGAGGCCTCTCTACAACTTTTCCTTGAACTTTTAAGAGGTAGGACCTTTCCAG 1419569 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||| || || ||||| || | || ||||||||| || ||||| || Sbjct 1419570 AGTCTTGAACCCAAAGTAATCATAGTCAAAGTCTCGATCATAAATGAT 1419617 Score = 93.3 bits (102), Expect = 5e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 63413 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63472 || |||| |||||| ||||| | || | || || | |||| | || | ||||||||| Sbjct 1419044 CCTTTTGCCTCCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAACATTGG 1419103 Query 63473 AATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATT 63532 || |||||| || ||| | ||||| || || ||||||| || |||||||||| || Sbjct 1419104 AACAATACCATTAGATGTTCCATTTGTTCCACGAATATAGCTGCCTGTGGCACGAATGTT 1419163 Query 63533 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63592 || || | ||| ||||| || || ||| || | || || ||||| || Sbjct 1419164 GTGAACAGAGACACCAATTCCTCCAGCTGATTTGCTAATGACAGCACACTCCTTTAAAGT 1419223 Query 63593 GTCATAGATGCCTTCTATGCTATCATCGATCATG 63626 ||||| |||||||| || |||||||| ||||| Sbjct 1419224 ATCATATATGCCTTCAATACTATCATCTTTCATG 1419257 >seq241 Length=1151104 Score = 96.9 bits (106), Expect = 4e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| ||||| | ||| | ||| |||| |||| | |||| | |||||||||||| || Sbjct 845254 TCCTCCATGATCAACGTAGCGAGCAGTGTCATTAAACACTCGAAGCATTGGAATAATGCC 845313 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || || | ||||| || || | || || | ||| | |||||||||||| | || Sbjct 845314 ATTGGAAGTCCCATTTGTCCCACAAATGTAACTGCCAGTAGCACGAATATTATGGACAGA 845373 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 || || ||||| || || | || || | || || ||| || || ||| | || Sbjct 845374 AAGGCCAATTCCTCCAGCTAACTTGCTAATAACAGCACACTCTTTCAAAGTATCAAAAAT 845433 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 || || ||||||||||| ||||| | |||||||||||| Sbjct 845434 TCCCTCAATGCTATCATCTTTCATGCACACAAGAAAACAGCTA 845476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629770174734720