Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq33 188 9e-43 seq241 123 3e-23 seq304 111 2e-19 >seq33 Length=1871104 Score = 188 bits (208), Expect = 9e-43 Identities = 396/583 (68%), Gaps = 8/583 (1%) Strand=Plus/Plus Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 ||| || |||||||||||||| | ||||||||||| || || ||||| || || || Sbjct 634286 CAAGCACGCGAAATCGCAGTGCAAACCCTCGTCTCGCGAGATCAACTCGTTAGAGAAAGT 634345 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAA 36272 | ||| ||||| | || |||||||| ||||||||||||| |||||| | ||||| | Sbjct 634346 TAATCCCGGCATCAACCCGCGCTTTTTTAGCCAAAATATGG-CGCAAAAACTTCCAGAGA 634404 Query 36273 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT 36332 | || || || || || ||||| || | ||||||||| | || | | | | Sbjct 634405 AAAATATCCCCTCCACGCATGCAAAAGCGACAAGTCTCTCAGCGAAA--GACTCCGATCC 634462 Query 36333 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 36390 || ||||| | ||||| || ||||| || |||||||| | ||||| || || Sbjct 634463 GTCGATCCATCTCAAGGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTCTCGATCGC 634522 Query 36391 ATTAAAGAGATAGtttttt-tCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 36449 | ||| | || | || || || | |||||| | ||| || || | |||||||||| Sbjct 634523 GTGAAATA-ATCGATTCTTCTCGGTCGAATCTTTGATATAAGTCTCCAGTAAAAGACTAT 634581 Query 36450 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 36509 |||| || || ||||| || ||||| || |||||||| || |||||| | |||||| | Sbjct 634582 ACATCTCAGAGTGAATATTCTCAATCGCGATTTGAAAGCCATAGAAAGCACGAGCCTCAG 634641 Query 36510 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 36569 | || || || | ||| || | || | |||||| || || || ||| || Sbjct 634642 AGACTTGGACCTCCTTCATAAAACGACCGGCAAGATTTTCGAGAACGATGCCATCAGAGG 634701 Query 36570 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCC 36629 | ||||| || || | ||||| ||| || | ||| || | | ||||| | || Sbjct 634702 CGGCAAAGAAGGCAAGGACATGAGATATGAAGTGTTTCTCATCGGAGGTTAGGGCCTCCC 634761 Query 36630 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 36689 | | || ||||| ||||| ||| || || || | |||||||| || ||||| || | Sbjct 634762 ATTGGCGGAGATCTTGAGATAGATCGACCTCCTCTGCAGTCCAAAAGGAGGCCTCGGCTT 634821 Query 36690 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732 | || ||||| | ||| || | | ||||| ||||| || || Sbjct 634822 TCTTGTACATTTCCCATATCTGTGGGTATTGGATTGGGAACAT 634864 >seq241 Length=1151104 Score = 123 bits (136), Expect = 3e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| ||||| | ||| | ||| |||| |||| | |||| | |||||||||||| || Sbjct 845254 TCCTCCATGATCAACGTAGCGAGCAGTGTCATTAAACACTCGAAGCATTGGAATAATGCC 845313 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 |||||| || ||||| ||||| | || || || ||| | |||||||||||| | || Sbjct 845314 ATTGGAAGTCCCATTTGTCCCACAAATGTAACTGCCAGTAGCACGAATATTATGGACAGA 845373 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 || || ||||| || || | || || | || || ||| || |||||| | || Sbjct 845374 AAGGCCAATTCCTCCAGCTAACTTGCTAATAACAGCACACTCTTTCAAAGTATCAAAAAT 845433 Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 66437 ||||| || |||||||| ||||| | |||||||||||| Sbjct 845434 TCCCTCAATGCTATCATCTTTCATGCACACAAGAAAACAGCTA 845476 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/155 (74%), Gaps = 6/155 (4%) Strand=Plus/Plus Query 65973 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 66032 |||||| ||| || || || |||||| || |||| |||||| ||||| || || Sbjct 844734 TACAATTTTTCAAATTCTTCACCCCAACAATCAGCCAAACCAGGAGCTTCATTGGGGCAA 844793 Query 66033 ATCAACGACCACTCTCCGTCATCCTTC--ACTCGTTTCATAAAGAGATCAGGAATCCAAA 66090 | || ||||| | ||| |||| |||| || ||||||||||||||||||||||| Sbjct 844794 AATAAAGACCAGCTGCTATCA--CTTCGGACTCTTTCCATAAAGAGATCAGGAATCCAAA 844851 Query 66091 GAGCTATA-AATAAATCTCTGGTTCTATGTTCCTC 66124 |||| ||| ||||||||||| | || | |||| || Sbjct 844852 GAGC-ATAGAATAAATCTCTAGCTCGACGTTCTTC 844885 >seq304 Length=2135540 Score = 111 bits (122), Expect = 2e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 ||||| ||||| || | ||| |||||||| || || |||||| | | ||| | | || Sbjct 1419391 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAACCATCTCTGAGACATCAAATGA 1419450 Query 66516 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 66574 || || | |||||||| || ||||| | ||| |||||||| || || || | ||| | Sbjct 1419451 TATGTTTTGATAGCTGAATCAATATCATCCTTG-TGAATTCCAACAGCAACCCTCATCAG 1419509 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTT-TATTTTCAACAAGTAGGATTTTTCCA 66633 |||||||||||| || || || | ||| | || | ||| || | |||||| |||||| Sbjct 1419510 CATGTGCTGAGGCCTCTCTAC-AACTTTTCCTTGAACTTTTAAGAGGTAGGACCTTTCCA 1419568 Query 66634 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 ||| || || ||||| || | || ||||||||| || ||||| || Sbjct 1419569 GAGTCTTGAACCCAAAGTAATCATAGTCAAAGTCTCGATCATAAATGAT 1419617 Score = 107 bits (118), Expect = 3e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 66206 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 66265 || |||| |||||| ||||| | || | || || | |||| | || | ||||||||| Sbjct 1419044 CCTTTTGCCTCCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAACATTGG 1419103 Query 66266 AATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATT 66325 || ||||||||| ||||| ||||| || || |||||||| || | |||||||| || Sbjct 1419104 AACAATACCATTAGATGTTCCATTTGTTCCACGAATATAGCTGCCTGTGGCACGAATGTT 1419163 Query 66326 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 66385 || || | ||| ||||| || || ||| || | || || ||||| || Sbjct 1419164 GTGAACAGAGACACCAATTCCTCCAGCTGATTTGCTAATGACAGCACACTCCTTTAAAGT 1419223 Query 66386 ATCATAGATGCCCTCTATACTATCATCCATCATG 66419 |||||| ||||| || ||||||||||| ||||| Sbjct 1419224 ATCATATATGCCTTCAATACTATCATCTTTCATG 1419257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658123239588160