Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1476 107 2e-18 seq100 107 2e-18 seq169 91.5 1e-13 seq33 86.0 6e-12 seq167 84.2 2e-11 >seq1476 Length=5289327 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || | ||||| |||||||| || ||||||||||||||| | Sbjct 642978 CCTCCACGGAGACGGAGCACAAGGTGAAGGGTAGACTCCTTCTGAATGTTATAATCGGCC 643037 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | | ||| || || ||||| || || ||||||| | ||||| || || || Sbjct 643038 AAGGTACGCCCGTCCTCTAGTTGTTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGG 643097 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| |||||| || | | || | |||||| || ||| || Sbjct 643098 ATGCCCTCCTTGTC-TTGAATTTTTGCCTTCACGTTGTCAATAGTGTCGCTGCTCTCAAC 643156 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||| || ||||| || || ||||| || ||||| Sbjct 643157 CTCGAGGGTGATGGTCTTCCCAGTCAAGGTCTTAACGAAAATCTGCAT 643204 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||||| || ||||| || || || || |||||| Sbjct 643433 GCCTCCACGGAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATATTGTAATCGGC 643492 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | |||||||||||||| || ||| |||| ||||| ||||| || || || Sbjct 643493 CAAAGTACGGCCATCTTCGAGCTGTTTCCCGGCAAAGATAAGACGCTGCTGGTCTGGCGG 643552 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| |||||| ||| | | || | |||||| || ||| || Sbjct 643553 GATACCTTCTTTGTCTTGGATTTTGGCTTTGACGTTGTCGATGGTGTCGCTGCTCTCTAC 643612 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||||||||| | || || ||||| || ||||| Sbjct 643613 CTCGAGAGTGATAGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCAT 643660 >seq100 Length=1654266 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | ||| ||||| | || ||||| |||||||||||||| || Sbjct 547025 CCACCTCTAAGACGGAGAACCAAGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCCGCA 546966 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | |||||| |||||| |||||| | |||||||| || || Sbjct 546965 AGGGTACGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAACCTCTGCTGATCAGGGGGA 546906 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| |||| | ||||| | || | ||||| | | ||||| Sbjct 546905 ATCCCTTCCTTGTC-CTGAATTTTGGCTTTTACGTTGTCAATAGTGTCTGAGCTTTCCAC 546847 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | |||||||| || | ||||| || || |||||||| Sbjct 546846 CTCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 546799 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | ||| ||||| | || ||||| |||||||||||||| || Sbjct 554094 CCACCTCTAAGACGGAGAACCAAGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCCGCA 554035 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | |||||| |||||| |||||| | |||||||| || || Sbjct 554034 AGGGTACGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAACCTCTGCTGATCAGGGGGA 553975 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| |||| | ||||| | || | ||||| | | ||||| Sbjct 553974 ATCCCTTCCTTGTC-CTGAATTTTGGCTTTTACGTTGTCAATAGTGTCTGAGCTTTCCAC 553916 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | |||||||| || | ||||| || || |||||||| Sbjct 553915 CTCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 553868 >seq169 Length=810068 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | || | || | ||| ||||| || || ||||| || ||| | Sbjct 363929 CCGCCGCGGAGACGGAGGACGAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 363870 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || | ||||||||||| || |||||| |||||| | || || ||||| || Sbjct 363869 AACGTGCGTCCA-TCTTCGAGCTGCTTTCCAGCAAAGATCAATCTCTGTTGGTCGGGTGG 363811 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | || | || |||| | ||| || Sbjct 363810 AATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCGATAGTATCGGAGCTCTCGAC 363751 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | || | ||||||||||| | ||||| ||||| || |||||| Sbjct 363750 CTCGAGAGTTATGGTCTTGCCGGTGAGAGTTTTCACGAAGATCTGCATA 363702 >seq33 Length=1871104 Score = 86.0 bits (94), Expect = 6e-12 Identities = 156/228 (68%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 52549 GTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCC 52608 ||||| |||||| ||||||| ||| ||||| |||| ||||||||| || | Sbjct 634510 GTTCCTTGTGTGGCTAAAAAGGCTGAGTGGGCCTTGAGATGGATCGA---CGGATCGGAG 634454 Query 52609 ACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGT 52668 |||| || || | || ||||| ||||| ||||| || | ||||| || || ||| Sbjct 634453 TCTTTCGCTGAGAGACTTGTCGCTTTTGCATGCGTGGAGGGGATATTTTTCTCTGGAAGT 634394 Query 52669 TTTGCGGCAATATTTTACATCAAAACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAAC 52728 ||| || ||||||| | |||| || | ||||| || | || || ||| Sbjct 634393 TTTTGCGCCATATTTTGGCTAAAAAAGCGCGGGTTGATGCCGGGATTAACTTTCTCTAAC 634334 Query 52729 GAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTG 52776 |||||||| ||||| ||||| || ||||| ||||| ||||| ||| Sbjct 634333 GAGTTGATCTCGCGAGACGAGGGTTTGCACTGCGATTTCGCGTGCTTG 634286 >seq167 Length=3484751 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | || | ||| | || ||||| || || ||||| |||||| Sbjct 2202952 GCCGCCACGGAGACGGAGGACGAGGTGGAGTGTTGACTCCTTCTGGATGTTGTAATCGGC 2203011 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||||| ||||| ||||| || || || |||||| | || ||||| || || Sbjct 2203012 TAATGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATCAACCTCTGTTGATCCGGTGG 2203071 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| || || | | || | ||| |||| | ||| || Sbjct 2203072 AATTCCTTCCTTATCTTGGATCTTGGCCTTGACGTTATCAATTGTATCGGAGCTCTCGAC 2203131 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | || | ||||||||||||| ||||| ||||| || |||||| Sbjct 2203132 CTCGAGAGTAATAGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATA 2203180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496026646380800