Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq33 217 2e-51 seq241 127 3e-24 seq304 111 2e-19 >seq33 Length=1871104 Score = 217 bits (240), Expect = 2e-51 Identities = 605/908 (67%), Gaps = 30/908 (3%) Strand=Plus/Plus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 || || |||||||| || | |||||| || |||||||| ||||||| |||||| || Sbjct 633999 TTCTGATATTCACCAACTCTTTTTTCAAAGAAATTAGTCTTTCCTTGCAATGAGATCAGC 634058 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 ||||| ||||||| || || || ||||| || || || | || | || | | Sbjct 634059 TCCATCCAATCAAAAGGGTTAGTCACATTGTATATCTTCCCGCACCCAAGCGCACCCAAC 634118 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT--AA 49846 || ||||| || ||||| || ||||| |||||| || | ||||| |||| || Sbjct 634119 AACCTATCAGCCACAAACTCAATATACTGGCTCATCAGCTCTCGGTTCATCCCTACCAAA 634178 Query 49847 GTTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTAT 49904 | || ||||| || |||| | ||| || ||||| || ||||| | Sbjct 634179 GCGCAA--GGAAGCGCGTCGCAT--ACAAACTCCCTCTCAATTTCCACTGCATCACGCAC 634234 Query 49905 AATAGA--TCTAACGGTT-TC-TTCA-CTCGGTGGATGCAATAAA-TGTTTAAACATCAA 49958 || || ||| | || |||| || | | ||| ||| ||| | | ||| Sbjct 634235 TATTCCCTTCACACGCTCCTCATTCAACTTCTTC--TTCAACAAACTGT----AGAGCAA 634288 Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 || |||||||||||||||| ||||||||||| || | ||||| || || || | Sbjct 634289 GCACGCGAAATCGCAGTGCAAACCCTCGTCTCGCGAGATCAACTCGTTAGAGAAAGTTAA 634348 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC--CCAGAAAAG 50076 ||| ||||| | || |||||||| ||||||||||||| |||||| || ||||| || Sbjct 634349 TCCCGGCATCAACCCGCGCTTTTTTAGCCAAAATATGG-CGCAAAA-ACTTCCAGAGAAA 634406 Query 50077 AAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGT 50136 || || || || || ||||| || ||||||||||| | || | | | | || Sbjct 634407 AATATCCCCTCCACGCATGCAAAAGCGACAAGTCTCTCAGCGAAA--GACTCCGATCCGT 634464 Query 50137 --ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 50194 ||||| | ||||| || ||||| || |||||||| | || || || || | Sbjct 634465 CGATCCATCTCAAGGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTCTCGATCGCGT 634524 Query 50195 TAAAGAGATAGtttttt-tCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 50253 ||| | || | || || || | |||||| | |||||| || | |||||||||||| Sbjct 634525 GAAATA-ATCGATTCTTCTCGGTCGAATCTTTGATATAAGTCTCCAGTAAAAGACTATAC 634583 Query 50254 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 50313 || || || ||||| || ||||| || || ||||| || |||||| | |||||| | Sbjct 634584 ATCTCAGAGTGAATATTCTCAATCGCGATTTGAAAGCCATAGAAAGCACGAGCCTCAGAG 634643 Query 50314 ATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCT 50373 | || || || | ||| || | || | |||||| || || || ||| ||| Sbjct 634644 ACTTGGACCTCCTTCATAAAACGACCGGCAAGATTTTCGAGAACGATGCCATCAGAGGCG 634703 Query 50374 GCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAA 50433 ||||| || || | ||||| ||| || ||||| || | || ||||| | ||| Sbjct 634704 GCAAAGAAGGCAAGGACATGAGATATGAAGTGTTTCTCATCGGAGGTTAGGGCCTCCCAT 634763 Query 50434 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 50493 | || ||||| ||||| ||| || || || | |||||||| || ||||| || || Sbjct 634764 TGGCGGAGATCTTGAGATAGATCGACCTCCTCTGCAGTCCAAAAGGAGGCCTCGGCTTTC 634823 Query 50494 TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 || ||||| | ||| || | | |||||||||||||| || |||| || ||| ||| Sbjct 634824 TTGTACATTTCCCATATCTGTGGGTATTGGATTGGGAACATGCAGAATCGATCTGGGTTT 634883 Query 50554 GGTGCAAG 50561 || || || Sbjct 634884 GGGGCTAG 634891 >seq241 Length=1151104 Score = 127 bits (140), Expect = 3e-24 Identities = 162/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | ||| | ||| |||| |||| | |||| | |||||||||||| || Sbjct 845254 TCCTCCATGATCAACGTAGCGAGCAGTGTCATTAAACACTCGAAGCATTGGAATAATGCC 845313 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 |||||| || ||||| ||||| | || || || ||| | |||||||||||| | || Sbjct 845314 ATTGGAAGTCCCATTTGTCCCACAAATGTAACTGCCAGTAGCACGAATATTATGGACAGA 845373 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 || || ||||| || || | || || | || || ||| || |||||| | || Sbjct 845374 AAGGCCAATTCCTCCAGCTAACTTGCTAATAACAGCACACTCTTTCAAAGTATCAAAAAT 845433 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 ||||| ||||||||||| ||||| | |||||||||||| Sbjct 845434 TCCCTCAATGCTATCATCTTTCATGCACACAAGAAAACAGCTA 845476 >seq304 Length=2135540 Score = 111 bits (122), Expect = 2e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| ||||| || | ||| |||||||| || || |||||| | | ||||| | || Sbjct 1419391 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAACCATCTCTGAGACATCAAATGA 1419450 Query 80395 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTAA 80453 || || | |||||||| || ||||| | ||| |||||||| || || || | ||| | Sbjct 1419451 TATGTTTTGATAGCTGAATCAATATCATCCTTG-TGAATTCCAACAGCAACCCTCATCAG 1419509 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATT-TATTTTCAACAAGTAAGATTTTTCCA 80512 |||||||||||| || || || | ||| | || | ||| || | ||| || |||||| Sbjct 1419510 CATGTGCTGAGGCCTCTCTAC-AACTTTTCCTTGAACTTTTAAGAGGTAGGACCTTTCCA 1419568 Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||| || || ||||| || | || ||||||||| || ||||| || Sbjct 1419569 GAGTCTTGAACCCAAAGTAATCATAGTCAAAGTCTCGATCATAAATGAT 1419617 Score = 105 bits (116), Expect = 1e-17 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 80088 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 80147 |||| |||||| ||||| | || | || || | |||| | || | ||||||||||| Sbjct 1419047 TTTGCCTCCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAACATTGGAAC 1419106 Query 80148 AATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACT 80207 ||||||||| ||||| ||||| || || |||||||| || |||||||||| || Sbjct 1419107 AATACCATTAGATGTTCCATTTGTTCCACGAATATAGCTGCCTGTGGCACGAATGTTGTG 1419166 Query 80208 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 80267 || || | ||| ||||| || || ||| || | || || ||||| ||||| Sbjct 1419167 AACAGAGACACCAATTCCTCCAGCTGATTTGCTAATGACAGCACACTCCTTTAAAGTATC 1419226 Query 80268 ATAGATGCCCTCTATGCTATCATCAATCATG 80298 ||| ||||| || || |||||||| ||||| Sbjct 1419227 ATATATGCCTTCAATACTATCATCTTTCATG 1419257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718214714359360