Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1476 91.5 1e-13 seq169 89.7 4e-13 seq167 86.0 5e-12 >seq1476 Length=5289327 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||||||||| || | | || | || | ||| |||||| || | ||||||||||| Sbjct 643433 GCCTCCACGGAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATATTGTAATCGGC 643492 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| ||||| | || || | ||||| |||||||| || | ||||| || || | ||| Sbjct 643493 CAAAGTACGGCCATCTTCGAGCTGTTTCCCGGCAAAGATAAGACGCTGCTGGTCTGGCGG 643552 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||||||| || ||| ||||||| || | | ||||||| ||| || Sbjct 643553 GATACCTTCTTTGTCTTGGATTTTGGCTTTGACGTTGTCGATGGTGTCGCTGCTCTCTAC 643612 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| || ||||| || || || || || || ||||| Sbjct 643613 CTCGAGAGTGATAGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCAT 643660 >seq169 Length=810068 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 42906 ATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTG 42965 ||||| ||| |||||| || | ||||| |||| ||| || ||| | || || | || Sbjct 363906 ATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAACGTGCGTCCATCTTCGAGCTG 363847 Query 42966 TTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAA 43025 || || ||||| ||||||| |||||| |||| || | ||||| || || |||| Sbjct 363846 CTTTCCAGCAAAGATCAATCTCTGTTGGTCGGGTGGAATTCCTTCCTTGTCTTGGATCTT 363787 Query 43026 CTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGG 43084 | ||||| | | | || ||| ||| |||||| || | ||||| || || |||| Sbjct 363786 GGCCTTGACATTATCGATAGTATCGG-AGCTCTCGACCTCGAGAGTTATGGTCTTGCCGG 363728 Query 43085 TTAGAGTTTTCACAAAAATTTGCATTTT 43112 | ||||||||||| || || ||||| || Sbjct 363727 TGAGAGTTTTCACGAAGATCTGCATATT 363700 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| | ||| | | || | ||| | |||| |||||||| | ||||||||||| Sbjct 364158 GCCTCCTCTCAGACGAAGAACAAGATGAAGAGTGGATTCCTTTTGTATATTGTAATCGGC 364099 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | ||||| | || || | || || ||||| ||||||| | || || || | || Sbjct 364098 GAGGGTACGGCCATCCTCAAGCTGCTTACCGGCGAAAATCAGCCTTTGCTGGTCAGGAGG 364039 Query 43002 CACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCG 43059 | ||||| || || |||| || | || || || | | ||||||| ||| |||| Sbjct 364038 AATTCCTTCCTTATC-CTGAATCTTAGCCTTAACGTTGTCGATTGTGTCGG-AGCTCTCG 363981 Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || | ||||||||||| ||||| || ||||| ||||| |||||||| Sbjct 363980 ACCTCGAGAGTTATAGTTTTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 363931 >seq167 Length=3484751 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||||||||| ||| |||||||| | |||||| || | | |||||| |||| || Sbjct 1287920 CACCAAATGGAGTGTGGATTCCTTTTGGATATTGTAGTCTGCAAGTGTACGCCCGTCCTC 1287861 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 | ||| || || ||||| || | | ||| || || | || | || ||||| || Sbjct 1287860 GAGTTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGGGGAATTCCCTCTTTGTCCTG 1287801 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCT-CGACGTCTACCGTTATAGTTT 43078 |||| ||||||| || ||| |||||| ||| | | || || | || || || | Sbjct 1287800 GATCTTTGCTTTGACATTGTCAATGGTGTCGG-AGCTTTCCACCTCAAGGGTGATTGTCT 1287742 Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || || || ||||||||||| |||||||| Sbjct 1287741 TGCCAGTAAGGGTTTTCACAAAGATTTGCAT 1287711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381341600797392