Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq33 192 8e-44 seq241 114 2e-20 seq304 111 2e-19 >seq33 Length=1871104 Score = 192 bits (212), Expect = 8e-44 Identities = 413/610 (68%), Gaps = 8/610 (1%) Strand=Plus/Plus Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120 ||| || |||||||||||||||| |||||| |||| || || ||||| || || || Sbjct 634286 CAAGCACGCGAAATCGCAGTGCAAACCCTCGTCTCGCGAGATCAACTCGTTAGAGAAAGT 634345 Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAA 42179 | ||| ||||| | || |||||||| ||||||||||| | |||||| | ||||| | Sbjct 634346 TAATCCCGGCATCAACCCGCGCTTTTTTAGCCAAAATATGG-CGCAAAAACTTCCAGAGA 634404 Query 42180 AGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT 42239 | || || || || || ||||| || | ||||||||| | || | | | | Sbjct 634405 AAAATATCCCCTCCACGCATGCAAAAGCGACAAGTCTCTCAGCGAAA--GACTCCGATCC 634462 Query 42240 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 || ||||| | ||||| || ||||| || |||||||| | || || || || Sbjct 634463 GTCGATCCATCTCAAGGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTCTCGATCGC 634522 Query 42298 ATTAAAGAGATAGtttttt-tCATTACTATCTTTAACATATGTATCGATCAAAAGACTAT 42356 | ||| | || | || || || | |||||| | ||| || || | |||||||||| Sbjct 634523 GTGAAATA-ATCGATTCTTCTCGGTCGAATCTTTGATATAAGTCTCCAGTAAAAGACTAT 634581 Query 42357 ACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGG 42416 |||| || || ||||| || ||||| || || ||||| || |||||| | ||||| | Sbjct 634582 ACATCTCAGAGTGAATATTCTCAATCGCGATTTGAAAGCCATAGAAAGCACGAGCCTCAG 634641 Query 42417 TAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGG 42476 || || || || | ||| || | || | ||||||| || || || ||| || Sbjct 634642 AGACTTGGACCTCCTTCATAAAACGACCGGCAAGATTTTCGAGAACGATGCCATCAGAGG 634701 Query 42477 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCC 42536 | ||||| || || | ||||| ||| || | ||| || || | |||| | || Sbjct 634702 CGGCAAAGAAGGCAAGGACATGAGATATGAAGTGTTTCTCATCGGAGGTTAGGGCCTCCC 634761 Query 42537 AATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCT 42596 | | || ||||| ||||| ||| || || ||| | |||||||| || || || || | Sbjct 634762 ATTGGCGGAGATCTTGAGATAGATCGACCTCCTCTGCAGTCCAAAAGGAGGCCTCGGCTT 634821 Query 42597 TTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGAT 42656 | || ||||| | ||| || | | ||||| |||||||| || |||| || ||| | Sbjct 634822 TCTTGTACATTTCCCATATCTGTGGGTATTGGATTGGGAACATGCAGAATCGATCTGGGT 634881 Query 42657 TTGGTGCAAG 42666 |||| || || Sbjct 634882 TTGGGGCTAG 634891 >seq241 Length=1151104 Score = 114 bits (126), Expect = 2e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||| ||||| | ||| | ||| |||| |||| | |||| | |||||||||||| || Sbjct 845254 TCCTCCATGATCAACGTAGCGAGCAGTGTCATTAAACACTCGAAGCATTGGAATAATGCC 845313 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 |||||| | ||||| ||||| | || || || ||| | ||||||||||| | || Sbjct 845314 ATTGGAAGTCCCATTTGTCCCACAAATGTAACTGCCAGTAGCACGAATATTATGGACAGA 845373 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 || || ||||| || || | || || | || || ||| || |||||| | || Sbjct 845374 AAGGCCAATTCCTCCAGCTAACTTGCTAATAACAGCACACTCTTTCAAAGTATCAAAAAT 845433 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399 ||||| || |||||||| ||||| | |||||||||||| Sbjct 845434 TCCCTCAATGCTATCATCTTTCATGCACACAAGAAAACAGCTA 845476 >seq304 Length=2135540 Score = 111 bits (122), Expect = 2e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 72168 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 72227 || |||| |||||| ||||| | || | || || | |||| | || | ||||||||| Sbjct 1419044 CCTTTTGCCTCCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAACATTGG 1419103 Query 72228 AATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT 72287 || ||||||||| |||| ||||| || || |||||||| || |||||||||| || Sbjct 1419104 AACAATACCATTAGATGTTCCATTTGTTCCACGAATATAGCTGCCTGTGGCACGAATGTT 1419163 Query 72288 GCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 72347 | || || | ||| ||||| || || ||| || | || || ||||| || Sbjct 1419164 GTGAACAGAGACACCAATTCCTCCAGCTGATTTGCTAATGACAGCACACTCCTTTAAAGT 1419223 Query 72348 ATCATAGATGCCCTCTATACTATCATCCATCATG 72381 |||||| ||||| || ||||||||||| ||||| Sbjct 1419224 ATCATATATGCCTTCAATACTATCATCTTTCATG 1419257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671088663218240