Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq167 98.7 1e-15 seq1476 91.5 1e-13 >seq167 Length=3484751 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| ||||| | ||| ||||| | ||| ||||| || || || || |||||| Sbjct 2202725 CCTCCTCGCAAACGGAGAACCAAATGCAGTGTGGATTCCTTCTGAATATTATAATCGGCA 2202784 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||||||||||||| ||||| |||||| | ||||| || || || Sbjct 2202785 AGGGTTCTTCCGTCTTCGAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCCGGTGGA 2202844 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || || | | || | || || | | || ||| Sbjct 2202845 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCGATGGTATCAGAGCTCTCGACT 2202904 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | || ||||| ||||| || || ||||| || ||||| Sbjct 2202905 TCAAGAGTAATGGTTTTGCCTGTCAAAGTCTTAACGAAGATCTGCAT 2202951 >seq1476 Length=5289327 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | ||| | || | |||| || || || || || || ||||||||| Sbjct 643433 GCCTCCACGGAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATATTGTAATCGGC 643492 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || | |||||||| ||||| || ||| |||| ||||| ||||| || || || Sbjct 643493 CAAAGTACGGCCATCTTCGAGCTGTTTCCCGGCAAAGATAAGACGCTGCTGGTCTGGCGG 643552 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| ||||| ||| | | || | ||||| || ||||| Sbjct 643553 GATACCTTCTTTGTCTTGGATTTTGGCTTTGACGTTGTCGATGGTGTCGCTGCTCTCTAC 643612 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||||||||| | || || ||||| || ||||| Sbjct 643613 CTCGAGAGTGATAGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCAT 643660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506976221815680