Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq33 154 2e-32 >seq33 Length=1871104 Score = 154 bits (170), Expect = 2e-32 Identities = 382/563 (68%), Gaps = 24/563 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || |||||||||||||| || || |||||||||||||||| | || ||||||||||| Sbjct 634840 ATATGGGAAATGTACAAGAAAGCCGAGGCCTCCTTTTGGACTGCAGAGGAGGTCGATCTA 634781 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || | || || | | |||||| | | | || |||| | | || ||||| Sbjct 634780 TCTCAAGATCTCCGCCAATGGGAGGCCCTAACCTCCGA---TGAGAAACACTTCATATCT 634724 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACA--C 125196 || | | ||||||||||||| ||| ||||| ||||| ||| ||||| || | | Sbjct 634723 CATGTCCTTGCCTTCTTTGCCGCCTCTGATGGCATCGTTCTCGAAAATCT--TGCCGGTC 634666 Query 125197 GATTCTCTCAAGAGTTGACCAT-TC-CAGAGGTGTCGTGCTTT-TACGGATTCCAAATCA 125253 | || | | ||| | | ||| || | |||| ||||||||| || || || |||||| Sbjct 634665 GTTT-TATGAAG-GAGGTCCAAGTCTCTGAGGC-TCGTGCTTTCTATGGCTTTCAAATCG 634609 Query 125254 TGATTGAGAACGTGCACTCGGAAATGTAC--TCTAC-ACTGATTGACATGTACATTCGCG 125310 ||||||||| | ||||| || ||||| ||| |||| || | || || | Sbjct 634608 CGATTGAGAATATTCACTCTGAGATGTATAGTCTTTTACTG---GAGACTTATATCAAAG 634552 Query 125311 ATCCGCAACGTAAACACATGCTC-TTTAACGCAATCGACACGGTGCCGTCTATACGTAAA 125369 || || | || || | | | ||| |||| ||||| || || || | | | |||| Sbjct 634551 ATTCG-ACCGAGAAGAATCGATTATTTCACGCGATCGAGACCGTTCCTTGTGTGGCTAAA 634493 Query 125370 AAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTG 125429 |||||| | |||| | | |||||||| | |||||| ||| || ||||| Sbjct 634492 AAGGCTGAGTGGGCCTTGAGATGGATCGACGGATCGGAGTCTTT---CGCTGAGAGACTT 634436 Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 || || || || ||| ||||| || || || || || |||||| ||||| |||||| Sbjct 634435 GTCGCTTTTGCATGCGTGGAGGGGATATTTTTCTCTGGAAGTTTTTGCGCCATATTTTGG 634376 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 || || |||||||| | ||||| ||| | || | ||||||||| || || |||||| Sbjct 634375 CTAAAAAAGCGCGGGTTGATGCCGGGATTAACTTTCTCTAACGAGTTGATCTCGCGAGAC 634316 Query 125550 GAGGGCCTACACTGTGACTTTGC 125572 ||||| | ||||| || || || Sbjct 634315 GAGGGTTTGCACTGCGATTTCGC 634293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741003398242240