Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq167 122 6e-23 seq596 113 3e-20 seq229 98.7 7e-16 seq169 98.7 7e-16 seq1476 95.1 9e-15 seq100 89.7 4e-13 >seq167 Length=3484751 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||| ||| | | ||| ||||| || ||||| || || || || || |||||| Sbjct 2202725 CCTCCTCGCAAACGGAGAACCAAATGCAGTGTGGATTCCTTCTGAATATTATAATCGGCA 2202784 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| ||||||| | |||||| |||||| | ||||| | || ||||| |||| Sbjct 2202785 AGGGTTCTTCCGTCTTCGAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCCGGTGGA 2202844 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| || ||| ||| ||| | || |||||||| | || || Sbjct 2202845 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCGATGGTATCAGAGCTCTCGACT 2202904 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||||||||||| ||||||| ||| || || || || ||||| Sbjct 2202905 TCAAGAGTAATGGTTTTGCCTGTCAAAGTCTTAACGAAGATCTGCAT 2202951 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| ||||| ||||| || || || || || || ||| | ||||| | |||| Sbjct 1288825 TGAAGAGTGGACTCTTTCTGGATATTATAGTCTGCAAGGGTTCGTCCATCTTCAAGTTGT 1288766 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | ||||| ||||||||||| ||||| || || ||||| ||||| Sbjct 1288765 TTACCAGCAAAAATCAATCGTTGTTGGTCCGGGGGAATACCCTCCTTGTCCTGGATTTTA 1288706 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || || || || | || || || | |||||||||||| |||||| Sbjct 1288705 GCCTTCACATTGTCAATTGTGTCAGAGCTCTCAACCTCGAGGGTAATGGTTTTCCCTGTC 1288646 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || ||||| |||||||| ||||| Sbjct 1288645 AGGGTTTTGACAAAAATCTGCAT 1288623 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| || | | || | ||| || || || || || || || || |||||| Sbjct 2202497 CCTCCTCTTAAACGGAGGACCAGATGCAGAGTCGATTCCTTCTGGATATTATAATCGGCG 2202556 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| ||||||| | ||| || |||||| | ||||| || || ||||| |||| Sbjct 2202557 AGTGTTCTTCCGTCTTCGAGTTGCTTTCCAGCGAAGATCAACCGCTGCTGGTCTGGTGGA 2202616 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| || ||| ||| || | || || |||||| | || || Sbjct 2202617 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATAGTATCGGAGCTCTCCACC 2202676 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| || || || || || ||||| ||||| || || || |||||| Sbjct 2202677 TCTAGCGTTATCGTCTTTCCGGTCAGGGTTTTCACGAAGATCTGCATA 2202724 >seq596 Length=4721113 Score = 113 bits (124), Expect = 3e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| | | || | ||||| || || || || || |||||||| || Sbjct 1300449 CCACCTCTCAAGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCTGCG 1300508 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | || ||||||| | ||||| |||||| | || | ||| || ||||| |||| Sbjct 1300509 AGGGTCCTGCCGTCTTCCAGCTGTTTTCCAGCGAAGATTAGACGCTGCTGGTCCGGTGGA 1300568 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| || ||| || ||| | || ||||||||| | || || Sbjct 1300569 ATTCCTTCCTTGTCTTGGATCTTGGCTTTCACATTGTCGATGGTATCGGAAGACTCAACC 1300628 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15368 || | ||||||||| ||||| || || ||||| || || || ||||| |||| Sbjct 1300629 TCGAGGGTAATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTTTG 1300680 >seq229 Length=2021663 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || |||||||| || || || |||||||| || || | | | | ||||| Sbjct 545527 ACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCAAGGGTGCGCCCATCTTCC 545586 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || |||||| | ||||| | || ||||| ||| |||||||||||||| Sbjct 545587 AGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCTTCTTTGTCCTGG 545646 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| | || ||||| || | || || || | ||| ||||| || Sbjct 545647 ATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACCTCAAGGGTGATGGTCTTT 545706 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||||||| ||||| |||||||| Sbjct 545707 CCAGTGAGAGTTTTCACAAAGATTTGCAT 545735 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || |||||||| || || || |||||||| || || | | | | ||||| Sbjct 547426 ACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCAAGGGTGCGCCCATCTTCC 547485 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || |||||| | ||||| | || ||||| ||| |||||||||||||| Sbjct 547486 AGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCTTCTTTGTCCTGG 547545 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| | || ||||| || | || || || | ||| ||||| || Sbjct 547546 ATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACCTCAAGGGTGATGGTCTTT 547605 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||||||| ||||| |||||||| Sbjct 547606 CCAGTGAGAGTTTTCACAAAGATTTGCAT 547634 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || |||||||| || || || |||||||| || || | | | | ||||| Sbjct 545071 ACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCAAGGGTGCGCCCATCTTCC 545130 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || |||||||| | ||||| | || ||||| ||| || || || ||||| Sbjct 545131 AGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGG 545190 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| | ||||| || || | |||| || || | ||| || || || Sbjct 545191 ATCTTGGCCTTCACATTGTCTATTGTGTCAGAACTTTCAACTTCCAGGGTGATTGTCTTC 545250 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||||||| || ||||| || ||||| Sbjct 545251 CCTGTCAGAGTCTTCACAAATATCTGCAT 545279 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || |||||||| || || || |||||||| || || | | | | ||||| Sbjct 546970 ACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCAAGGGTGCGCCCATCTTCC 547029 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || |||||||| | ||||| | || ||||| ||| || || || ||||| Sbjct 547030 AGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGG 547089 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| | ||||| || || | |||| || || | ||| || || || Sbjct 547090 ATCTTGGCCTTCACATTGTCTATTGTGTCAGAACTTTCAACTTCCAGGGTGATTGTCTTC 547149 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||||||| || ||||| || ||||| Sbjct 547150 CCTGTCAGAGTCTTCACAAATATCTGCAT 547178 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| | | | || ||| || ||||||||||| ||||| || |||||||| || Sbjct 544595 TGCCACCACGAAGACGTAGAACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCTG 544654 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | | ||||| | || || ||||| | ||||| | || || || || Sbjct 544655 CAAGGGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGATCTGGTG 544714 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || || || ||||| || ||| ||| ||| | || || ||||| |||| | Sbjct 544715 GGATGCCCTCCTTGTCCTGTATCTTGGCCTTCACATTGTCAATAGTATCAGAGCTTTCAA 544774 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || || || || || || ||||||||||| || ||||| || ||||| Sbjct 544775 CTTCCAACGTGATTGTCTTCCCTGTCAGAGTCTTCACAAATATCTGCAT 544823 >seq169 Length=810068 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || ||||| || || || |||||||| ||| | | | | ||||| | || Sbjct 363906 ATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAACGTGCGTCCATCTTCGAGCTG 363847 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || ||||| | ||||| | ||||||||| |||||||||||| ||||| || || Sbjct 363846 CTTTCCAGCAAAGATCAATCTCTGTTGGTCGGGTGGAATTCCTTCCTTGTCTTGGATCTT 363787 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| ||| | || || |||||| | || || || | || ||||| || || || Sbjct 363786 GGCCTTGACATTATCGATAGTATCGGAGCTCTCGACCTCGAGAGTTATGGTCTTGCCGGT 363727 Query 15340 CAGAGTTTTTACAAAAATTTGCATATTTGAAAAT 15373 |||||||| || || || |||||||| |||||| Sbjct 363726 GAGAGTTTTCACGAAGATCTGCATATTGGAAAAT 363693 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| ||||||| | | ||| | |||||| ||||| || |||||||| ||||||||| Sbjct 364159 TGCCTCCTCTCAGACGAAGAACAAGATGAAGAGTGGATTCCTTTTGTATATTGTAATCGG 364100 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | | || || | || || || ||| | |||| | ||| ||||| | Sbjct 364099 CGAGGGTACGGCCATCCTCAAGCTGCTTACCGGCGAAAATCAGCCTTTGCTGGTCAGGAG 364040 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||||||||| || || ||| || ||| || | || || || ||| | || | Sbjct 364039 GAATTCCTTCCTTATCCTGAATCTTAGCCTTAACGTTGTCGATTGTGTCGGAGCTCTCGA 363980 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || | || || ||||| || || || ||||| ||||| ||||||||| Sbjct 363979 CCTCGAGAGTTATAGTTTTGCCGGTGAGGGTTTTAACAAAGATTTGCATA 363930 >seq1476 Length=5289327 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || |||||||||||| | | | | |||| |||| ||| Sbjct 643230 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGCCAAGGTACGCCCGTCCTCTAGCTGT 643289 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || || ||| | |||| | || || || ||||||||||| || || ||| ||| Sbjct 643290 TTTCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATTCCTTCCTTATCCTGAATCTTT 643349 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || ||| ||| | || ||||| |||||| |||| || || | ||||| || || || || Sbjct 643350 GC-CTTGACATTATCGATGGTGTCGCTACTTTCAACCTCCAGAGTAATAGTCTTTCCAGT 643408 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || ||||| Sbjct 643409 CAAGGTCTTGACGAAGATCTGCAT 643432 >seq100 Length=1654266 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | | | ||| || || ||||| || || ||||| ||||| || || Sbjct 547025 CCACCTCTAAGACGGAGAACCAAGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCCGCA 546966 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| || ||||||||||| | ||||| | || || || ||| Sbjct 546965 AGGGTACGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAACCTCTGCTGATCAGGGGGA 546906 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| ||||||| ||||| | || || || || |||| || Sbjct 546905 ATCCCTTCCTTGTCCTGAATTTTGGCTTTTACGTTGTCAATAGTGTCTGAGCTTTCCACC 546846 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||| || || || || ||||| ||||| |||||||| Sbjct 546845 TCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 546799 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | | | ||| || || ||||| || || ||||| ||||| || || Sbjct 554094 CCACCTCTAAGACGGAGAACCAAGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCCGCA 554035 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| || ||||||||||| | ||||| | || || || ||| Sbjct 554034 AGGGTACGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAACCTCTGCTGATCAGGGGGA 553975 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| ||||||| ||||| | || || || || |||| || Sbjct 553974 ATCCCTTCCTTGTCCTGAATTTTGGCTTTTACGTTGTCAATAGTGTCTGAGCTTTCCACC 553915 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||| || || || || ||||| ||||| |||||||| Sbjct 553914 TCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 553868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362152609708584