Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq596 100 2e-16 seq1476 84.2 2e-11 >seq596 Length=4721113 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| | | ||||| ||| | || |||||||| ||||| ||||| || || Sbjct 1300449 CCACCTCTCAAGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCTGCG 1300508 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || || |||| ||||||||||| || || | || || | |||||| ||| || Sbjct 1300509 AGGGTCCTGCCGTCTTCCAGCTGTTTTCCAGCGAAGATTAGACGCTGCTGGTCCGGTGGA 1300568 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || ||||| || || ||| || | | ||| |||||| || ||| Sbjct 1300569 ATTCCTTCCTTGTCTTGGATCTTGGCTTTCACATTGTCGATGGTATCGGAAGACTCAACC 1300628 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 |||| ||||||||| ||||| |||| ||||| || || || ||||| || Sbjct 1300629 TCGAGGGTAATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 1300678 >seq1476 Length=5289327 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || || | ||| | ||| | ||| | || || ||||| |||||||||||||| | Sbjct 642748 TTCCACCACGAAGCCTGAGCACAAGGTGGAGAGTGGATTCCTTCTGAATATTGTAATCGG 642807 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 ||| ||| | | || ||||| || ||||| || | || || |||||||| || | Sbjct 642808 CCAAAGTTCGGCCATCTTCCAGTTGCTTACCGGCGAAGATCAGCCTCTGCTGGTCTGGTG 642867 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | |||||| ||||| |||||| || || | | | ||| || | ||| Sbjct 642868 GGATGCCCTCCTTGTCTTGAATTTTTGCCTTCACGTTATCAATAGTGTCACTGCTCTCAA 642927 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| ||||| || || || || || ||||| ||||| ||||| Sbjct 642928 CCTCCAGGGTGATGGTCTTTCCAGTCAAGGTCTTGACGAAAATCTGCAT 642976 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | ||||||||||| ||||| || ||||| |||| || ||||||| Sbjct 642995 CACAAGGTGAAGGGTAGACTCCTTCTGAATGTTATAATCGGCCAAGGTACGCCCGTCCTC 643054 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || ||||| || || | || || |||||||| || || | |||||| ||||| Sbjct 643055 TAGTTGTTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTG 643114 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 |||||| || || | | | | ||| |||| ||| |||| ||| ||||| || Sbjct 643115 AATTTTTGCCTTCACGTTGTCAATAGTGTCGCTGCTCTCAACCTCGAGGGTGATGGTCTT 643174 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || || || || ||||| ||||| Sbjct 643175 CCCAGTCAAGGTCTTAACGAAAATCTGCAT 643204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414542363101456