Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq167 82.4 5e-11 >seq167 Length=3484751 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || || || ||||| ||||||||||||| | | | | || ||||| ||||||||| Sbjct 2202299 GTAGATTCCTTTTGGATATTGTAATCAGCAAGAGTCCTTCCATCCTCCAACTGCTTTCCA 2202358 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATC---GCCTGT 33289 || ||||| || ||||| || | ||| || ||||| || || |||| ||| Sbjct 2202359 GCGAAGATTAACCGCTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTTAGCC--- 2202415 Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349 || || | | ||| || ||| | || || ||||| ||||| || ||||| || || Sbjct 2202416 TTGACGTTGTCAATTGTATCGGAGCTTTCCACCTCCAGCGTTATAGTCTTTCCAGTTAGG 2202475 Query 33350 GTTTTTACGAAAATTTGCAT 33369 ||||| ||||| || ||||| Sbjct 2202476 GTTTTCACGAATATCTGCAT 2202495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318754196145552