Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq169 104 2e-17 seq167 86.0 4e-12 >seq169 Length=810068 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||| ||| || ||| |||||||| || ||||||||| | || |||| || Sbjct 364367 ACCAGATGCAGAGTGGATTCTTTTTGGATGTTATAATCGGCAAGAGTCCGGCCATCCTCT 364308 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | || ||||| || || |||||||| |||||||| | || | |||||| || ||| | Sbjct 364307 AGCTGCTTTCCGGCGAAAATCAACCGCTGCTGGTCAGGTGGAATACCTTCCTTGTCTTGA 364248 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| |||||| || ||| ||||||| ||||| || | || || || || Sbjct 364247 ATTTTGGCTTTGACATTATCAATTGTATCTGAGCTTTCCACCTCCAAAGTTATAGTCTTG 364188 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||||| | |||||||||||| || |||||| Sbjct 364187 CCGGTGAGAGTCTTCACAAAAATCTGCATG 364158 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTG-ACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 ||||| |||||||||||||| | || || ||| |||| |||||||| || || ||||| Sbjct 364577 TCTTTCTGAATATTATAATC-TGCAAGTGTACGGCCATCCTCCAATTGCTTCCCAGCAAA 364519 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 || | || ||||| || | || | ||||| || || |||||| || || | Sbjct 364518 AATAAGCCTCTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGAATTTTAGCCTTTACATT 364459 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 | ||| ||||| | |||||| || | || || || || ||||| || ||||| || Sbjct 364458 ATCAATTGTATCAGAACTCTCCACCTCTAAAGTGATGGTCTTTCCGGTCAATGTCTTAAC 364399 Query 44110 AAATATTTGCAT 44121 ||| || ||||| Sbjct 364398 AAAAATCTGCAT 364387 >seq167 Length=3484751 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||||| ||| | | |||||||| || ||| || || ||||||||||||||| Sbjct 2202724 ACCTCCTCGCAAACGGAGAACCAAATGCAGTGTGGATTCCTTCTGAATATTATAATCGGC 2202783 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | | || || | ||||||||| || || ||||| | ||||||||| | || Sbjct 2202784 AAGGGTTCTTCCGTCTTCGAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCCGGTGG 2202843 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| || ||| || || ||||| || | | ||||| | ||| || Sbjct 2202844 AATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCGATGGTATCAGAGCTCTCGAC 2202903 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGTCG 44125 || | ||||| ||||| || || |||||||| || || || |||||| || Sbjct 2202904 TTCAAGAGTAATGGTTTTGCCTGTCAAAGTCTTAACGAAGATCTGCATGCCG 2202955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354751553115552