Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq271 95.1 1e-14 seq813 82.4 6e-11 >seq271 Length=609135 Score = 95.1 bits (104), Expect = 1e-14 Identities = 110/147 (75%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 19970 TTTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTAT 20028 ||| ||||| ||||||||| | |||||| ||||| || || || ||||| || || || Sbjct 324053 TTTGATCATAGTTCCTCCTCTAAGCCTCAAAACCAAGTGAAGAGTTGATTCCTTCTGGAT 324112 Query 20029 GTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTG 20088 |||||||| | | |||| || ||||||||||||||| || ||| |||| | || || Sbjct 324113 ATTGTAATCTGCAAGAGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTG 324172 Query 20089 TTGATCGACGGGCACGCCTTCTTTGTC 20115 |||||| || | ||||| ||||| Sbjct 324173 TTGATCAGGAGGGATCCCTTCCTTGTC 324199 >seq813 Length=767751 Score = 82.4 bits (90), Expect = 6e-11 Identities = 107/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 19970 TTTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTAT 20028 ||| ||||| ||||||||| | ||||| |||| || ||||| ||||| || || || Sbjct 436274 TTTGATCATAGTTCCTCCTCTAAGCCTCAGAACCAGGTGAAGTGTTGATTCCTTCTGAAT 436333 Query 20029 GTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTG 20088 ||| ||||| | | |||| |||||||||||| ||||| ||| |||| | ||||| Sbjct 436334 GTTATAATCAGCAAGAGTTCGGCCATCTTCCAATTGCTTGCCAGCAAAAATCAATCTCTG 436393 Query 20089 TTGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| || | |||||| || || Sbjct 436394 CTGATCAGGAGGGATGCCTTCCTTATC 436420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419556394956744