Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq33 116 3e-21 seq148 84.2 2e-11 >seq33 Length=1871104 Score = 116 bits (128), Expect = 3e-21 Identities = 555/869 (64%), Gaps = 21/869 (2%) Strand=Plus/Plus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 |||||||| || || |||||||| | ||||||||||||||| || || || |||||| Sbjct 633984 GACATAACCGAAGCCTTCTGATATTCACCAACTCTTTTTTCAAAGAAATTAGTCTTTCCT 634043 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTT---A 12961 | || || || ||||| |||| ||||| || || || || |||| | || Sbjct 634044 TGCAATGAGATCAGCTCCATCCAATCAAAAGGGTTAGTC--AC-ATTGTATATCTTCCCG 634100 Query 12962 CACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCA 13021 ||||| | | ||||| || ||||| |||||||| || ||||| |||| | || Sbjct 634101 CACCCAAGCGCACCCAACAACCTATCAGCCACAAACTCAATATACTGGCTCATCAGCTCT 634160 Query 13022 CAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCA 13081 | |||||| |||| || ||| | || || || ||| | | || || || Sbjct 634161 CGGTTCATCCCTACCAAAGCGCAAGGAAGCGCGTCGCATACAAACTCCCTCTCAATTTCC 634220 Query 13082 ACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGAT---AGATGC 13138 ||||| || ||||| || ||| ||| || || || | | | | | | | Sbjct 634221 ACTGCATCACGCACTAT-TCCCTTCACACGCTC-CTCATTCAACTTCTTCTTCAACAAAC 634278 Query 13139 TTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTT 13198 | | | || || || ||||| |||||||| || || |||| || | |||||| Sbjct 634279 -TGTAGAGCAAGCACGCGAAATCGCAGTGCAAACCCTCGTCTCGCGAGATCAACTCGTTA 634337 Query 13199 GAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAA 13258 || || |||| |||||||| | ||| || ||||| | ||||||||| || ||||| || Sbjct 634338 GAGAAAGTTAATCCCGGCATCAACCCGCGCTTTTTTAGCCAAAATATGGC-GCAAA--AA 634394 Query 13259 ---CCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTA 13315 || || |||||||| || || || |||||| || | | || ||| | | | | Sbjct 634395 CTTCCAGAGAAAAATATCCCCTCCACGCATGCAAAAGCGACAAGTCTCTCAGCGAAAG-A 634453 Query 13316 CTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATA 13375 || | | || ||||| | |||||| | || |||| || || | Sbjct 634454 CTCCGAT--CCGTCGATCCATCTCAAGGCCCACTCAGCCTTTTTAGCCACACAAGGAACG 634511 Query 13376 TTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATC 13435 | || || |||| |||||| ||| || || | ||| |||||||| || | Sbjct 634512 GTCTCGATCGCGTGAAATAATCGATTCTTCTCGGTCGAATCTTTGATATAAGTCTCCAGT 634571 Query 13436 AATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACAT 13495 || | |||||||| || || |||||||| || ||||| ||||| || ||||| ||| Sbjct 634572 AAAAGACTATACATCTCAGAGTGAATATTCTCAATCGCGATTTGAAAGCCATAGAAAGCA 634631 Query 13496 CTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATC 13555 | |||||| || || || || || ||| | | || | |||||| ||| || Sbjct 634632 CGAGCCTCAGAGACTTGGACCTCCTTCATAAAACGACCGGCAAGATTTTCGAGAACGATG 634691 Query 13556 CCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGAC 13615 || ||| || ||||| || ||||| | || || || | ||| || | | Sbjct 634692 CCATCAGAGGCGGCAAAGAAGGCAAGGACATGAGATATGAAGTGTTTCTCATCGGAGGTT 634751 Query 13616 AACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAA 13675 | ||| | | | ||||| |||| ||| |||||||| | |||||||| || Sbjct 634752 AGGGCCTCCCATTGGCGGAGATCTTGAGATAGATCGACCTCCTCTGCAGTCCAAAAGGAG 634811 Query 13676 GCAACAGCCTTCTTATACATCATCCATAT 13704 || | || ||||| ||||| |||||| Sbjct 634812 GCCTCGGCTTTCTTGTACATTTCCCATAT 634840 >seq148 Length=2349003 Score = 84.2 bits (92), Expect = 2e-11 Identities = 80/100 (80%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 13151 CATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGA 13210 |||||||| ||||| |||| ||||||||||| |||||||| ||||| ||||||| | Sbjct 546851 CATGCAAAGTCACAATGCAGGCCTTCATCTCTGGAAATTAGCTCATTTGAGAATGTTAAA 546792 Query 13211 CCCGGCAT-AAGCCCTCGTTTTTTAATCCAAAATATAGCA 13249 || ||||| |||||| | ||||||| ||| || || ||| Sbjct 546791 CCAGGCATCAAGCCC-CTCTTTTTAAGCCAGAAAATGGCA 546753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430950758349648