Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq596 98.7 8e-16 seq169 98.7 8e-16 seq167 89.7 4e-13 seq41 82.4 6e-11 >seq596 Length=4721113 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/209 (72%), Gaps = 10/209 (5%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTC--GCTCGTCCTCCAGCT 48581 ||||| || |||||| ||||||||||| || | | | ||| || |||| ||||||| Sbjct 1300473 TGAAGAGTCGACTCCTTCTGAATGTTGTAGTCTG-CGAGGGTCCTGC-CGTCTTCCAGCT 1300530 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 | || || || | |||| ||||||||| ||| || | | ||||||||| || | Sbjct 1300531 GTTTTCCAGCGAAGATTAGACGCTGCTGGTCCGGTGGAATTCCTTCCTTGTCTTGGATCT 1300590 Query 48642 TCTGCTT---GATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTAC 48698 | |||| || | || |||||||||| |||||| ||||| || ||||| |||| Sbjct 1300591 T-GGCTTTCACATTGTCG--ATGGTATCGGAAGACTCAACCTCGAGGGTAATGGTCTTAC 1300647 Query 48699 CGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | || || |||||||| || ||||||||| Sbjct 1300648 CCGTTAGGGTTTTCACGAAGATCTGCATC 1300676 >seq169 Length=810068 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||| | || | || | ||| || ||| || ||||| ||||| ||||| || Sbjct 364385 CCACCGCGGAGCCGGAGAACCAGATGCAGAGTGGATTCTTTTTGGATGTTATAATCGGC- 364327 Query 48560 AATTGTC-GCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || ||| | | ||||| |||||||| ||| || |||| || |||||||| || || Sbjct 364326 AAGAGTCCGGCCATCCTCTAGCTGCTTTCCGGCGAAAATCAACCGCTGCTGGTCAGGTGG 364267 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || ||||||||| |||||| |||| | | || ||||| | ||| Sbjct 364266 AATACCTTCCTTGTCTTGAATTTTGGCTTTGACATTATCAATTGTATCTGAGCTTTCCAC 364207 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||||| || || ||||||||||| ||||||||||||||||| Sbjct 364206 CTCCAAAGTTATAGTCTTGCCGGTGAGAGTCTTCACAAAAATCTGCAT 364159 >seq167 Length=3484751 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||| | ||| | || | ||||| || |||||||| || ||||||||||| Sbjct 2202269 CCACCGCGAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTTTGGATATTGTAATCAGC- 2202327 Query 48560 AATTGTCGCTCG-TCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || ||| || ||||||| |||||| || || | ||||| ||||||||||| || Sbjct 2202328 AAGAGTCCTTCCATCCTCCAACTGCTTTCCAGCGAAGATTAACCGCTGCTGATCTGGGGG 2202387 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || ||||||||| ||| || ||||| | || ||||||| ||| Sbjct 2202388 AATACCTTCCTTGTCTTGAATCTTAGCCTTGACGTTGTCAATTGTATCGGAGCTTTCCAC 2202447 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||||| || || || || || |||||||| || |||||||| Sbjct 2202448 CTCCAGCGTTATAGTCTTTCCAGTTAGGGTTTTCACGAATATCTGCAT 2202495 >seq41 Length=2736928 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 48536 TCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||| || |||||||| || || | | || || | |||||||||||||| ||| || | Sbjct 677276 TCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGGC-CATCCTCCAGCTGCTTTCCGGCGAA 677334 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| || || | | |||||||||| || || ||||| | Sbjct 677335 GATCAGTCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 677394 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| || | |||||| ||| | ||||| || || || || || |||||||| Sbjct 677395 ATCGATGGTGTCAGAAGACTCAACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCAC 677454 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 677455 GAAGATCTGCAT 677466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421220272790024