Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq407 118 6e-22 seq91 118 6e-22 seq941 113 2e-20 seq38 111 8e-20 seq141 109 3e-19 seq731 107 1e-18 seq455 107 1e-18 seq81 105 3e-18 seq65 105 3e-18 seq351 104 1e-17 seq132 104 1e-17 seq54 102 4e-17 seq1188 89.7 3e-13 >seq407 Length=2957635 Score = 118 bits (130), Expect = 6e-22 Identities = 86/99 (87%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 11432 TATAGAATTAATAAAAAATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCG 11490 |||| || ||| |||||| | |||||||||||| | | |||||||| ||||||||||| Sbjct 503515 TATAAAAATAAGAAAAAAAGATAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCG 503574 Query 11491 TTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||| ||||||||||||||| |||| Sbjct 503575 TTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 503613 >seq91 Length=1815332 Score = 118 bits (130), Expect = 6e-22 Identities = 76/84 (90%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||||||| |||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 287749 AAAATCAATTTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 287808 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 287809 TCTAACCAACTGAGCTAATAGGCC 287832 >seq941 Length=925551 Score = 113 bits (124), Expect = 2e-20 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||| | | |||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 158276 AATAAAAATTTCATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 158335 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 158336 GACGCTCTAACCAACTGAGCTAATAGGCC 158364 >seq38 Length=1328481 Score = 111 bits (122), Expect = 8e-20 Identities = 87/104 (84%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 ||| ||| || || ||||| | ||| ||||||||| | | |||||||| ||||||| Sbjct 1125431 AAAGATAAAAGGAAAAAAAATTTAAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTT 1125490 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||||||||||||| ||||||||||||||| ||||| Sbjct 1125491 CGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCCG 1125534 >seq141 Length=3557338 Score = 109 bits (120), Expect = 3e-19 Identities = 76/87 (87%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| || ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 2544185 TAAAAAAATAAGATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 2544244 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||||| |||| Sbjct 2544245 CGCTCTAACCAACTGAGCTAATAGGCC 2544271 >seq731 Length=353185 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||| ||||||| || Sbjct 39266 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACAACGCTCTAAC 39207 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 39206 CAACTGAGCTAATAGGCC 39189 >seq455 Length=1129310 Score = 107 bits (118), Expect = 1e-18 Identities = 75/85 (88%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| || ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 949536 AAAAAT-AATGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 949594 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 949595 CTCTAACCAACTGAGCTAATAGGCC 949619 >seq81 Length=1691141 Score = 105 bits (116), Expect = 3e-18 Identities = 77/89 (87%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||| |||||| | ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 357881 AATGAAAAATTTA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 357938 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 357939 GACGCTCTAACCAACTGAGCTAATAGGCC 357967 >seq65 Length=1854670 Score = 105 bits (116), Expect = 3e-18 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 1546935 AAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 1546876 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 1546875 AACTGAGCTAATAGGCC 1546859 >seq351 Length=175139 Score = 104 bits (114), Expect = 1e-17 Identities = 78/92 (85%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 11441 AATAAAAAATC---AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 || ||||||| ||| ||||||||| | | |||||||| |||||||||||||||||| Sbjct 26753 AAAAAAAAATTTTAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAG 26812 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||| ||||||||||||||| |||| Sbjct 26813 CACGACACTCTAACCAACTGAGCTAATAGGCC 26844 >seq132 Length=3907184 Score = 104 bits (114), Expect = 1e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 266091 ATTGGCCCATGCTGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 266032 Query 11514 ACTGAGCTAATGGGCC 11529 ||||||||||| |||| Sbjct 266031 ACTGAGCTAATAGGCC 266016 Score = 98.7 bits (108), Expect = 5e-16 Identities = 78/94 (83%), Gaps = 4/94 (4%) Strand=Plus/Plus Query 11441 AATAAAAAATCA----AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || ||||||| | || ||||||||| | | |||||||| ||||||| ||||||||| Sbjct 1134070 AAAAAAAAATTATTTTAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTGGCGTTATTA 1134129 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||| ||||||| ||||||||||||||| ||||| Sbjct 1134130 GCACCACGCTCTAACCAACTGAGCTAATAGGCCG 1134163 >seq54 Length=3626826 Score = 102 bits (112), Expect = 4e-17 Identities = 72/82 (88%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 11448 AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTC 11507 |||||| ||||||||| | | |||||||| ||||||||||||||||||||||||||| Sbjct 300220 AATCAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTT 300277 Query 11508 TRACCAACTGAGCTAATGGGCC 11529 | ||||||||||||||| |||| Sbjct 300278 TAACCAACTGAGCTAATAGGCC 300299 Score = 100 bits (110), Expect = 1e-16 Identities = 71/81 (88%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 11448 AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTC 11507 |||||| ||||||||| | | |||||||| |||||||||||||||||||||||||| | Sbjct 306143 AATCAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCCC 306200 Query 11508 TRACCAACTGAGCTAATGGGC 11528 | ||||||||||||||| ||| Sbjct 306201 TAACCAACTGAGCTAATAGGC 306221 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| |||||||||||||||||||||| |||||| |||||| Sbjct 306543 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGCCGCTCTAACCAAC 306602 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 306603 TGAGCTAATAGGCC 306616 Score = 95.1 bits (104), Expect = 6e-15 Identities = 71/83 (86%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 11447 AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCT 11506 ||||||| ||||||||| | | |||||||| |||||||||||||||||||||| ||| Sbjct 300016 AAATCAA--TGGCCCATGCAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGATGCT 300073 Query 11507 CTRACCAACTGAGCTAATGGGCC 11529 || |||||| |||||||| |||| Sbjct 300074 CTAACCAACAGAGCTAATAGGCC 300096 Score = 93.3 bits (102), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 2/72 (3%) Strand=Plus/Plus Query 11448 AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTC 11507 |||||| ||||||||| | | |||||||| |||||||||||||||||||||||||||| Sbjct 300734 AATCAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTC 300791 Query 11508 TRACCAACTGAG 11519 | |||||||||| Sbjct 300792 TAACCAACTGAG 300803 Score = 93.3 bits (102), Expect = 2e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 11457 GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACT 11516 ||||| || | | ||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 308317 GGCCCGTGCAGGTCTCGAACCGGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACT 308376 Query 11517 GAGCTAATGGGCC 11529 |||||||| |||| Sbjct 308377 GAGCTAATAGGCC 308389 Score = 91.5 bits (100), Expect = 8e-14 Identities = 70/83 (84%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 11447 AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCT 11506 ||||||| ||||||||| | | |||||| | ||||||||||||||||||||||| | | Sbjct 300420 AAATCAA--TGGCCCATGCAGGTCTCGAACATGCGACCTTCGCGTTATTAGCACGATGAT 300477 Query 11507 CTRACCAACTGAGCTAATGGGCC 11529 || | ||||||||||||| |||| Sbjct 300478 CTAATCAACTGAGCTAATAGGCC 300500 Score = 89.7 bits (98), Expect = 3e-13 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 11462 ATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCT 11521 || || || |||||||| ||||||||||||||||||||||| ||||| |||||| ||||| Sbjct 299896 ATCAATGGCTCGAACCTGCGACCTTCGCGTTATTAGCACGATGCTCTAACCAACAGAGCT 299955 Query 11522 AATGGGCC 11529 ||| |||| Sbjct 299956 AATAGGCC 299963 Score = 89.7 bits (98), Expect = 3e-13 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 11457 GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACT 11516 ||||| || | | ||||||| |||||||||||||||||||||| |||||| ||||||| Sbjct 306741 GGCCCGTGCAGGTCTCGAACCGGCGACCTTCGCGTTATTAGCACGCCGCTCTAACCAACT 306800 Query 11517 GAGCTAATGGGCC 11529 |||||||| |||| Sbjct 306801 GAGCTAATAGGCC 306813 Score = 89.7 bits (98), Expect = 3e-13 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 11457 GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACT 11516 ||||| || | | ||||||| |||||||||||||||||||||| |||||| ||||||| Sbjct 306938 GGCCCGTGCAGGTCTCGAACCGGCGACCTTCGCGTTATTAGCACGCCGCTCTAACCAACT 306997 Query 11517 GAGCTAATGGGCC 11529 |||||||| |||| Sbjct 306998 GAGCTAATAGGCC 307010 Score = 89.7 bits (98), Expect = 3e-13 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 11457 GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACT 11516 ||||| || | | ||||||| |||||||||||||||||||||| |||||| ||||||| Sbjct 307135 GGCCCGTGCAGGTCTCGAACCGGCGACCTTCGCGTTATTAGCACGCCGCTCTAACCAACT 307194 Query 11517 GAGCTAATGGGCC 11529 |||||||| |||| Sbjct 307195 GAGCTAATAGGCC 307207 Score = 89.7 bits (98), Expect = 3e-13 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 11457 GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACT 11516 ||||| || | | ||||||| |||||||||||||||||||||| |||||| ||||||| Sbjct 307332 GGCCCGTGCAGGTCTCGAACCGGCGACCTTCGCGTTATTAGCACGCCGCTCTAACCAACT 307391 Query 11517 GAGCTAATGGGCC 11529 |||||||| |||| Sbjct 307392 GAGCTAATAGGCC 307404 Score = 89.7 bits (98), Expect = 3e-13 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 11457 GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACT 11516 ||||| || | | ||||||| |||||||||||||||||||||| |||||| ||||||| Sbjct 307529 GGCCCGTGCAGGTCTCGAACCGGCGACCTTCGCGTTATTAGCACGCCGCTCTAACCAACT 307588 Query 11517 GAGCTAATGGGCC 11529 |||||||| |||| Sbjct 307589 GAGCTAATAGGCC 307601 Score = 89.7 bits (98), Expect = 3e-13 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 11457 GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACT 11516 ||||| || | | ||||||| |||||||||||||||||||||| |||||| ||||||| Sbjct 307726 GGCCCGTGCAGGTCTCGAACCGGCGACCTTCGCGTTATTAGCACGCCGCTCTAACCAACT 307785 Query 11517 GAGCTAATGGGCC 11529 |||||||| |||| Sbjct 307786 GAGCTAATAGGCC 307798 Score = 89.7 bits (98), Expect = 3e-13 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 11457 GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACT 11516 ||||| || | | ||||||| |||||||||||||||||||||| |||||| ||||||| Sbjct 307923 GGCCCGTGCAGGTCTCGAACCGGCGACCTTCGCGTTATTAGCACGCCGCTCTAACCAACT 307982 Query 11517 GAGCTAATGGGCC 11529 |||||||| |||| Sbjct 307983 GAGCTAATAGGCC 307995 Score = 89.7 bits (98), Expect = 3e-13 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 11457 GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACT 11516 ||||| || | | ||||||| |||||||||||||||||||||| |||||| ||||||| Sbjct 308120 GGCCCGTGCAGGTCTCGAACCGGCGACCTTCGCGTTATTAGCACGCCGCTCTAACCAACT 308179 Query 11517 GAGCTAATGGGCC 11529 |||||||| |||| Sbjct 308180 GAGCTAATAGGCC 308192 Score = 86.0 bits (94), Expect = 3e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | | ||||| ||||||||||||||||||||| ||||||| |||||| Sbjct 308559 TGGCCCATGTAGGTCCCAAACCTGCGACCTTCGCGTTATTAGCACAACGCTCTAACCAAC 308618 Query 11516 TGAGCTAATGGGCC 11529 |||||||| |||| Sbjct 308619 TGAGCTAAGAGGCC 308632 Score = 82.4 bits (90), Expect = 4e-11 Identities = 73/90 (81%), Gaps = 4/90 (4%) Strand=Plus/Plus Query 11442 ATAAA--AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||||| |||||| |||||||||| | | |||||||| ||||||| | |||||| || Sbjct 300614 ATAAACGAAATCA--TTGGCCCATGCAGGTCTCGAACCTACGACCTTTGTATTATTATCA 300671 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||| | ||| ||||||||||||||| |||| Sbjct 300672 CGATGTTCTAACCAACTGAGCTAATAGGCC 300701 >seq1188 Length=871058 Score = 89.7 bits (98), Expect = 3e-13 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | || ||||| | ||||||||||||||||||||||||| |||| Sbjct 689979 ATTGGCCCATGCAGGTTTCAAACCTGCAGGCTTCGCGTTATTAGCACGACGCTCTAACCA 690038 Query 11514 ACTGAGCTAATGGGCC 11529 ||||||||||| |||| Sbjct 690039 ACTGAGCTAATAGGCC 690054 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261472001969824