Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq251 156 7e-34 seq70 147 3e-31 seq446 123 4e-24 seq807 111 2e-20 >seq251 Length=807922 Score = 156 bits (172), Expect = 7e-34 Identities = 179/241 (74%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| ||||| |||||||| || || || || || ||||| | |||||||| | Sbjct 404208 GAGATAACATACAAGGCATCACCAAACCTGCAATTCGCCGATTGGCTAGACGTGGTGGCG 404149 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| |||| || | | || || || | | | |||||||||||| |||||| Sbjct 404148 TTAAGCGTATCTCCGGTCTAATTTACGAGGAAACCAGAGGTGTTTTGAAGATTTTCCTCG 404089 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||||| | |||||| | |||||| |||||||| || |||||||| || Sbjct 404088 AGAATGTTATTCGAGATGCTGTTACCTATACAGAGCACGCCCGCCGCAAGACTGTTACTG 404029 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | |||||||| ||||| | || ||||||| | ||||||||||| ||| Sbjct 404028 CAATGGATGTTGTCTATGCCTTGAAGAGGCAGGGCCGTACTCTCTATGGTTTTGGTGGTT 403969 Query 16698 A 16698 | Sbjct 403968 A 403968 >seq70 Length=3714297 Score = 147 bits (162), Expect = 3e-31 Identities = 191/264 (72%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 16436 AAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGT 16495 ||||||||||| | | ||| || |||||||| || |||||||| ||||| || || || Sbjct 2656695 AAGCGTCATCGGAAAGTTCTCCGTGATAACATTCAGGGAATCACAAAGCCGGCGATTCGC 2656754 Query 16496 CGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGT 16555 || ||||||| | |||||||| || | || ||||||| |||| ||||| | |||| Sbjct 2656755 CGGTTGGCTCGAAGAGGTGGAGTGAAAAGAATCAGTGGATTGATCTACGAAGAAACTCGT 2656814 Query 16556 GATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCAC 16615 | || | ||||||||| ||| || || | ||||||| | || || ||||| Sbjct 2656815 GGAGTACTCAAGATCTTCTCGGAGAAGGTGATTCGTGATGCTGTGACATACACTGAGCAT 2656874 Query 16616 GCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGT 16675 |||| | ||||| || ||| |||||||| | |||||||| ||||| | ||||| | Sbjct 2656875 GCTAGGAGAAAGACGGTGACCGCCATGGATGTGGTCTATGCTTTGAAGAGGCAAGGAAGG 2656934 Query 16676 AAGATTTATGGTTTTGGAAGTTAA 16699 | ||||||| |||||| | ||| Sbjct 2656935 ACTCTTTATGGATTTGGAGGGTAA 2656958 Score = 129 bits (142), Expect = 9e-26 Identities = 172/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| || || || || ||||| || || |||||| |||||||||| ||||| || Sbjct 3076604 GATAACATTCAGGGTATTACTAAGCCTGCAATTCGTCGTTTGGCTCGTCGAGGTGGTGTA 3076545 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | || ||| ||| |||||||||||| |||| ||| | ||||||||| | | Sbjct 3076544 AAGAGGATCAGTGGTTTGATCTATGAAGAGACACGTGGTGTCCTCAAGATCTTCTTGGAA 3076485 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| ||||| | ||||| |||||||||| | ||||| || || || Sbjct 3076484 AACGTGATCCGCGATGCCGTGACTTATACTGAGCACGCTAGGAGAAAGACAGTTACTGCC 3076425 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | || |||||| | || | || || | | | |||||||| || |||| Sbjct 3076424 ATGGATGTGGTGTATGCACTCAAGAGGCAGGGAAGGACCTTGTATGGTTTCGGGGGTTA 3076366 >seq446 Length=3715969 Score = 123 bits (136), Expect = 4e-24 Identities = 187/266 (70%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||| | | ||| |||||||| || | || ||||| ||||| || ||| Sbjct 3004995 GCCAAGAGGCATCGGAAAGTTCTCCGAGATAATATTTAGGGCATCACAAAGCCCGCAATC 3005054 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || ||| | ||||| ||||| |||||| || ||| || ||||||| || | Sbjct 3005055 CGACGACTCGCTAGACGTGGAGGAGTAAAGCGTATCAGTGGCTTAATCTATGAGGAAACA 3005114 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | |||| | |||||||| || ||| || || |||||| | || ||||| Sbjct 3005115 AGAGGTGTTCTAAAGATCTTTCTTGAGAATGTAATTAGAGATGCTGTTACTTACACCGAA 3005174 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || || |||||||| | ||||| | || ||||| ||||| | ||||| Sbjct 3005175 CACGCTCGCCGGAAAACTGTCACAGCGATGGACGTTGTTTATGCCTTGAAGAGACAAGGT 3005234 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698 | | ||||||||||||| |||| Sbjct 3005235 AGGACTCTTTATGGTTTTGGTGGTTA 3005260 >seq807 Length=2915068 Score = 111 bits (122), Expect = 2e-20 Identities = 174/249 (70%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| ||||| |||||||| || || || || | || |||||| | || || | Sbjct 2139994 GAGATAACATTCAAGGCATCACCAAACCGGCCATTCGCAGGCTCGCTCGTAGAGGAGGCG 2139935 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| | | |||||||||| | | | || | ||||||||||| Sbjct 2139934 TCAAGCGTATCAGTGGTCTCATTTATGAAGAGACTAGAGGCGTACTCAAGATCTTCCTTG 2139875 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | |||||| | || || || || ||| | ||||| || ||| Sbjct 2139874 AGAATGTGATTCGCGATGCTGTTACTTACACTGAACATGCTCGTAGAAAGACAGTAACCG 2139815 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | ||||| || | || | || || || | | ||||||||||| ||| Sbjct 2139814 CCATGGATGTTGTCTACGCTCTCAAGAGGCAGGGTCGCACTCTCTATGGTTTTGGCGGTT 2139755 Query 16698 AATCTTCTA 16706 ||| || || Sbjct 2139754 AATTTTGTA 2139746 Score = 109 bits (120), Expect = 9e-20 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| || || ||||| || || || || || | || |||||| | || || | Sbjct 2211046 GAGATAACATTCAGGGCATCACTAAACCCGCCATTCGCAGGCTTGCTCGTAGAGGAGGTG 2211105 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| | |||||||||| | | | ||| | ||||||||||| Sbjct 2211106 TCAAGCGTATCAGTGGTCTCATCTATGAAGAAACCAGAGGCGTTCTCAAGATCTTCCTTG 2211165 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | | ||| || | || ||| | |||||||| || ||| | | ||||| || || Sbjct 2211166 AAAACGTGATTCGCGACGCTGTTACTTATACCGAACATGCTCGAAGAAAGACCGTAACTG 2211225 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||||||| |||||||||| | || | || || |||| | ||||| ||||| Sbjct 2211226 CCATGGATGTCGTCTATGCTCTCAAGAGGCAGGGTCGTACCCTCTATGGCTTTGG 2211280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069692214632