Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq6024 628 3e-175 seq456 194 2e-44 seq214 134 2e-26 seq102 122 1e-22 seq823 107 2e-18 >seq6024 Length=163856 Score = 628 bits (696), Expect = 3e-175 Identities = 714/955 (75%), Gaps = 2/955 (0%) Strand=Plus/Minus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 ||||| | ||| | |||||||| || ||||| || || | || |||||||| || Sbjct 1512 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1453 Query 135434 ATGATTCCTACTCTTCTCGCAGCTGCTATCTGC-TTTATTGTTGCTTTCATCGCTGCACC 135492 ||||| |||||| | | | || || |||| |||||| | |||||||| |||||||| Sbjct 1452 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCACC 1394 Query 135493 TCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAA 135552 ||| || |||||||| || || || ||||||||| |||| |||||| | || ||||| || Sbjct 1393 TCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAA 1334 Query 135553 CATCATCTCTGGTGCTGTTATCCCTTCTAGCAACGCCATCGGCCTTCACTTCTATCCCAT 135612 || || |||||||| |||| ||| || || || || | || || || || || Sbjct 1333 TATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAAT 1274 Query 135613 CTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTGGT 135672 |||||||| || || ||||||| ||| |||| ||||| ||||||||| | ||| | || Sbjct 1273 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 1214 Query 135673 CTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTACCG 135732 | || ||| | | ||||| | |||||||||||| ||||||||||| || ||| Sbjct 1213 TCTACATTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1154 Query 135733 ACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTGC 135792 ||||||||||||||||||||| ||| || || ||||| |||||||| ||||||||||| Sbjct 1153 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 1094 Query 135793 TGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGCAT 135852 ||||||| || |||| || |||| ||||| || |||||||||||| || || || Sbjct 1093 TGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAAT 1034 Query 135853 TTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCATCC 135912 ||||| ||||| |||| ||| |||| |||||||| || |||||||| || ||||| || Sbjct 1033 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 974 Query 135913 TTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCATGG 135972 || |||||||| || || ||||| || ||||| ||||| || ||| |||||||||||| Sbjct 973 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 914 Query 135973 ATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTATGG 136032 || | || ||||||||| | | | || || || || ||||| || | || Sbjct 913 TTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 854 Query 136033 TTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTCGG 136092 ||||| ||||||||||| ||||| ||||| || || || || ||||||||||| || || Sbjct 853 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 794 Query 136093 TCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTTGC 136152 || |||||||||||||||| |||||||| |||||||| |||| || ||| | || Sbjct 793 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 734 Query 136153 TGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTCAA 136212 |||||||||||| || ||||| ||||| |||| | || | || ||||| ||||| Sbjct 733 TGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAA 674 Query 136213 CCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAACAC 136272 ||| ||||| ||||| |||||||| ||| | || | | ||||||||||| | || || Sbjct 673 CCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 614 Query 136273 CTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 |||||| ||| | | || |||||| || |||||||| || ||||| || ||| Sbjct 613 CTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 559 Score = 598 bits (662), Expect = 5e-166 Identities = 743/1011 (73%), Gaps = 16/1011 (2%) Strand=Plus/Plus Query 137875 TGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTT 137934 ||||||||||| | | || || || || ||||| |||||||| || ||| | || | Sbjct 37258 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCT 37317 Query 137935 TTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCT 137994 |||| || ||||| ||| | || || ||| | || || ||||| ||||| || | Sbjct 37318 TTCCTTGCGCCTATTTCGCCTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACCTCAT 37377 Query 137995 GGTACACCCACGGGTTGGCGTCTAGTT---ATCTTGAAGGCGCTAATTTCCTCACAGCAG 138051 |||| ||||| || ||||| ||||| || | |||||| || ||| | || || | Sbjct 37378 GGTATACCCATGGATTGGC---TAGTTCCTATTTGGAAGGCTGCAACTTCTTAACCGCTG 37434 Query 138052 CTGTTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGT 138111 | ||||| ||||||||| || | | | |||||| | | |||| |||||||| || Sbjct 37435 CAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTATGGGGTCCCGAAG 37494 Query 138112 CTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCC 138171 | ||||| ||| | || |||| ||| | || || | ||||||||||| || |||| Sbjct 37495 CACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTTTGTGGACTTTTGTTGCTCTCC 37554 Query 138172 ACGGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCGTCTGGTAG 138231 |||| || || | || || || || ||| | || || ||||| | |||| || Sbjct 37555 ACGGTGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCCGT-- 37612 Query 138232 GCA--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGT 138289 ||| | || || || || |||||||||||||||||||| || ||||| || || || Sbjct 37613 GCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGT 37672 Query 138290 GTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGC 138349 |||||||| ||||| | ||||| || ||||||| ||||| || |||||||| || Sbjct 37673 ATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTTTTTGCGCCTAGTTTTGGTGTAGC 37732 Query 138350 AGCAATCTTCCGAT---TCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCC 138406 ||| || || |||| |||| || |||| ||||||| ||||||||||| || ||||| Sbjct 37733 AGCTATATTTCGATTCATCCTCTTTTTCC--AAGGGTTT-CATAACTGGACGCTGAACCC 37789 Query 138407 CTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGG 138466 |||||||||||||| || || || | | |||| ||||||||| || ||||||||||| Sbjct 37790 ATTTCATATGATGGGGGTTGCCGGCGTATTAGGTGCTGCTCTGCTATGCGCTATTCATGG 37849 Query 138467 TGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATT 138526 |||||| |||||||||||||| | ||||||||| || ||||||| || || || Sbjct 37850 TGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTT 37909 Query 138527 TGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCA 138586 | | || ||||||| |||||||| |||||||||||||| |||||||| | ||||| || Sbjct 37910 TAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCA 37969 Query 138587 AATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCC 138646 ||||||||| |||||||| ||||| |||||| | || ||||||||| | ||||| || Sbjct 37970 AATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACC 38029 Query 138647 CGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGC 138706 || | ||| | |||| ||| | |||| | | ||||| ||||| || ||||| || Sbjct 38030 AGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAATCTACGTGC 38089 Query 138707 GTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTA 138766 ||||| ||||| || || || || |||||||| |||||||||||||| ||||| ||||| Sbjct 38090 CTATGACTTCGTTTCTCAGGAGATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTA 38149 Query 138767 CACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACC 138826 ||| || || ||||| | || |||||| | ||||| |||||||| || ||||| || Sbjct 38150 CACTAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCC 38209 Query 138827 TCACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 ||| |||||| || | || ||||| || || | ||| | || |||||||| Sbjct 38210 TCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 38260 >seq456 Length=400266 Score = 194 bits (214), Expect = 2e-44 Identities = 344/496 (69%), Gaps = 8/496 (2%) Strand=Plus/Minus Query 138291 TTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCA 138350 ||| |||| ||||| || | ||| |||| || ||| | |||||| |||| ||| Sbjct 321115 TTCTTGATTTATCCATTATGCTAATTTGGTTGATTTTTTATGCTTTCCTTTTGTGTAGCA 321056 Query 138351 GCAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTT 138410 | || || |||||| | || || | || | || |||||| || | ||||| ||| Sbjct 321055 ACTATATTTCGATTCATCTTCTTTTTCCAAGAGTTTTATAACTAGATGTTGAACCCATTT 320996 Query 138411 CATATGATGGGCGTAGCAGGTATTCT-TGGTGG----TGCTCTGCTCTGTGCTATTCATG 138465 ||||||| ||| || || || || | | ||| ||||||||| || |||||||| Sbjct 320995 CATATGACGGGAGTTGCCGGCATATTGTATTGGGCACTGCTCTGCTATGCACTATTCATA 320936 Query 138466 GTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCAT 138525 ||| || |||||||| ||||| | ||||||||| || ||| ||||| | | | Sbjct 320935 GTGTTATTGTAGAAAAGACTTTATCTGAAGATGGTGATGGTGTAAACACTTTGCATACCT 320876 Query 138526 TTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGC 138585 || |||| |||||| |||||||| |||||| | || ||||| |||| | ||||| | Sbjct 320875 TTAAACCAACTCAATCTGAAGAAACTTATTCAGTCGTCACTGCCAACCACTTTTGGTCTC 320816 Query 138586 AAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTC 138645 |||||||||| ||||||||| |||||| |||| | | ||||||||| | | | | | Sbjct 320815 AAATCTTTGG-ATTGCTTTTTCTAATAAATGTTGATTATATTTCTTTATGTTATCTATAC 320757 Query 138646 CCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAG 138705 | || || | | | | || ||| | || | || | | | | || | || ||| | | Sbjct 320756 CAGTAATCGATTTATAGATGAGTGCTCTTAGAATAGTCGATTTGACTTTCAATCTATGTG 320697 Query 138706 CGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCT 138765 | ||||| || | || ||||||| || || ||| ||||||||||| |||| |||| Sbjct 320696 CCTATGACTTTGCTTCTCAAGAAA-TCTATAAGAGGAAAATCCTGAATTC-AGACTTTCT 320639 Query 138766 ACACCAAGAACATTCT 138781 |||| || || ||||| Sbjct 320638 ACACTAAAAATATTCT 320623 >seq214 Length=442246 Score = 134 bits (148), Expect = 2e-26 Identities = 156/202 (77%), Gaps = 15/202 (7%) Strand=Plus/Plus Query 138291 TTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCA 138350 |||||||| |||||| ||||||| || ||||||| ||||| || |||||||| ||| Sbjct 75047 TTCCTGATTTATCCTCTGGGTCAGTCTGGTTGGTTTTTTGCGCCAGT-TTTGGTGTAGCA 75105 Query 138351 GCAATCTTCCGATTC---CTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCC 138407 || || || |||||| || || |||| ||||||| ||||||| || ||||| Sbjct 75106 GCTATATTTCGATTCATCCTCTTTTTCCA--AGGGTTTA-ATAACTG----CTGAACCCA 75158 Query 138408 TTTCATATGATGGGCGTAGC-AG-GTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATG 138465 |||||||| ||||| || || || ||||| |||| ||||||| || |||||||||| Sbjct 75159 TTTCATATCATGGGGGTTGCCAGCGTATTA--GGTGCTGCTCTGTAATGCGCTATTCATG 75216 Query 138466 GTGCTACAGTAGAAAATACTTT 138487 ||| ||| |||||||||||||| Sbjct 75217 GTGGTACTGTAGAAAATACTTT 75238 >seq102 Length=2022542 Score = 122 bits (134), Expect = 1e-22 Identities = 225/327 (69%), Gaps = 6/327 (2%) Strand=Plus/Plus Query 135546 GAAATAACATCATCTCTGGTGCTGTTATCCCTTCTA--GCAACGCCATCGGCCTTCACTT 135603 ||||||| || || | |||||| |||| ||| || ||| || || | | || || Sbjct 1591986 GAAATAATATTATTTATGGTGCCATTATTCCTACTTTTGCA--GCTATAGATTTGCATTT 1592043 Query 135604 CTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCA 135663 || || || ||||||| | | | ||||||| || |||| |||| |||| ||||| | Sbjct 1592044 TTACCCAATACGGGAAGCATCATTTATTGATGAATGATTATACAATGATGGTTCTTATGA 1592103 Query 135664 ACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACT 135723 ||| | || | | ||| | | ||||| | ||||||||||| ||||| || | Sbjct 1592104 GCTAATTGTTCTATATTTCTTACTTGGTGTAGCTTGTTACATGGGTCCTAAGTGGAAAGT 1592163 Query 135724 C--TCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCC 135781 | || || ||| ||||||||||||||||| || | || ||| | ||| || Sbjct 1592164 TAGTTTTTCCATCTGCGTATGCGCCCTTGGATTGTAGTTACGTATTCAACTCCTATTATA 1592223 Query 135782 GCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATG 135841 | ||||||| |||||||| || |||| || |||| ||||| || |||||||||| Sbjct 1592224 GTTGCTACTACTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTTTGATGGTATG 1592283 Query 135842 CCGCTTGGCATTTCTGGAACTTTTAAC 135868 || || || || ||| | ||||| ||| Sbjct 1592284 CCTCTAGGAATCTCTAGTACTTTCAAC 1592310 >seq823 Length=108574 Score = 107 bits (118), Expect = 2e-18 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 135467 TTTATTGTTGCTTTCATCGCTGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTT 135526 |||||| | |||||||| ||||||||||| || |||||||| || || || ||||||||| Sbjct 46644 TTTATTATCGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 46703 Query 135527 GCTGGTTCTCTAATGTACGGAAATAACATCATCTCTGGTGCTGTTATCCCTTCT 135580 |||| |||||| | || ||||| || || || |||||||| |||| ||| || Sbjct 46704 TCTGGGTCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACT 46757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627920714009600