Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq6024 569 6e-158 seq823 93.3 1e-14 seq135 93.3 1e-14 seq102 89.7 1e-13 >seq6024 Length=163856 Score = 569 bits (630), Expect = 6e-158 Identities = 723/987 (73%), Gaps = 6/987 (1%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || || || ||||| ||||| | || |||||||| || | Sbjct 1512 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1453 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| ||| | | || ||| || ||||| |||| || || || ||||| Sbjct 1452 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCACCT 1393 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || ||||| || ||||| || || || | || ||||||||| Sbjct 1392 CCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAAT 1333 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 ||||||||||| || | |||| | || || ||||| |||| ||||| || || Sbjct 1332 ATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATA 1273 Query 19530 TGGGAAGCCGGCA-CTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGT 19588 |||||||| |||| | | ||||| ||||||||||| |||||||| ||| | || |||| Sbjct 1272 TGGGAAGC-GGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 1214 Query 19589 CTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAG 19648 | || |||||| | || ||||| ||| ||| | |||||||||| || | | Sbjct 1213 TCTACATTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1154 Query 19649 ATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGC 19708 | || ||| | || ||||| || |||||| |||| || | |||| ||| ||| Sbjct 1153 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 1094 Query 19709 TGTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTA 19767 ||| ||||| | | || ||| |||| ||||| || ||| ||||||||||||||| || | Sbjct 1093 TGT-TTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAA 1035 Query 19768 TCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATC 19827 ||||||||||||| ||||||||| | |||||||| || || ||||| ||||||||||| | Sbjct 1034 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 975 Query 19828 CGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACG 19887 | || |||||| | || || ||||| |||||||| || || || ||| ||||||||| | Sbjct 974 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 915 Query 19888 GAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATG 19947 | ||||| || || | |||| |||||| || || ||| ||| || | | Sbjct 914 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 855 Query 19948 GCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTG 20007 | || | ||||| ||||| ||||| || |||||||| || || || || || || |||| Sbjct 854 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 795 Query 20008 GGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTG 20067 | ||||||| || ||||||||| |||||| ||||||||||||||||||||||| | | Sbjct 794 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 735 Query 20068 CTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCA 20127 || ||| || || || || || ||| | || | | || || ||||||||||||||| Sbjct 734 CTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 675 Query 20128 ACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCA 20186 |||| |||||||| || || ||||| || ||||||||| ||||| || |||| Sbjct 674 ACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAA-GGTCGTGTAATTAAT 616 Query 20187 ACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAAT 20246 || ||||||||| | | || | |||||||| || | ||||||||||| || || ||| Sbjct 615 ACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 556 Query 20247 GCTCATAACTTCCCACTTGATTTAGCT 20273 |||||||||||||| || || ||||| Sbjct 555 GCTCATAACTTCCCTCTAGACCTAGCT 529 >seq823 Length=108574 Score = 93.3 bits (102), Expect = 1e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 19383 TTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTT 19442 ||||| |||| || || || ||||| || |||||||| ||||| || ||||| || ||| Sbjct 46644 TTTATTATCGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 46703 Query 19443 TCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAAT 19502 || || || || | || |||||||||||||||||||| || | |||| | || Sbjct 46704 TCTGGGTCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCG 46763 Query 19503 GCAATAGGACTGCACTTTTATCCGATCTG 19531 || ||||| |||| ||||| || || || Sbjct 46764 GCTATAGGTTTGCATTTTTACCCAATATG 46792 >seq135 Length=947859 Score = 93.3 bits (102), Expect = 1e-14 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 19748 TGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGA 19807 ||||||||||||| | || ||||| ||||||| ||||||||| | ||||||||||| || Sbjct 378306 TGATGGTATGCCTATAGGAATCTCCAGTACTTTCAACTTTATGATTGTATTCCAAGCTGA 378247 Query 19808 ACACAATATCCTTATGCATCCGTTCCACATG 19838 || || ||||||||||| || || ||||| Sbjct 378246 GCAGAACATCCTTATGCACCCATTTTACATG 378216 >seq102 Length=2022542 Score = 89.7 bits (98), Expect = 1e-13 Identities = 234/348 (67%), Gaps = 8/348 (2%) Strand=Plus/Plus Query 19462 GAAACAATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTT 19521 |||| |||||||||| ||| || | |||| | | || |||| |||| |||| Sbjct 1591986 GAAATAATATTATTTATGGTGCCATTATTCCTACTTTTGCAGCTATAGATTTGCATTTTT 1592045 Query 19522 ATCCGATCTGGGAAGCCGGCACTT-TAGATGAGTGGTTATACAACGGCGGTCCATATCAA 19580 | || || ||||||| || || | ||||| || |||||||| | ||| | ||| | Sbjct 1592046 ACCCAATACGGGAAGCAT-CATTTATTGATGAATGATTATACAATGATGGTTCTTATGAG 1592104 Query 19581 CTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTA 19640 || |||| | | |||||| | || ||||| ||| ||| ||||| || | Sbjct 1592105 CTAATTGTTCTATATTTCTTACTTGGTGTAGCTTGTTACATGGGTCCTAAGTGGAAAGTT 1592164 Query 19641 --TCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACC-ACTATCA 19697 | || | | | ||| | || ||||| | || | ||| || | || | ||| | Sbjct 1592165 AGTTTTTCCATCTGCGTATGCGCCCTTGGATTGTAGTTACGTATTCAACTCCTATTAT-A 1592223 Query 19698 GCAGCTCTTGCTGTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTAT 19756 | ||| | |||| ||||| | | || ||| |||| ||||| || ||| ||||||||| Sbjct 1592224 GTTGCTACTACTGT-TTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTTTGATGGTAT 1592282 Query 19757 GCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGC 19804 |||||| || |||||| ||||||| ||| ||||| | | ||| ||||| Sbjct 1592283 GCCTCTAGGAATCTCTAGTACTTTCAACATTATGATTGCATTGCAAGC 1592330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144431267370144