Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq6024 500 1e-136 seq135 89.7 8e-13 >seq6024 Length=163856 Score = 500 bits (554), Expect = 1e-136 Identities = 680/945 (72%), Gaps = 4/945 (0%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCG 211669 |||| |||||||||||| | |||||||| | | | | ||||| | ||||| Sbjct 1472 TTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTA 1413 Query 211670 TAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTT 211729 | || ||||| || |||||||| || ||||| || || || |||||||| || |||| | Sbjct 1412 TCGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGT 1353 Query 211730 CATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCG 211789 | | | ||||| ||||| || || |||||||| || |||| |||| || || | Sbjct 1352 CTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAG 1293 Query 211790 GTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTG 211849 |||| || || || || || |||||||| ||| | ||||||| ||| | |||||||| | Sbjct 1292 GTTTGCATTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCG 1233 Query 211850 GTCCTTACCAGTTGGTAATCTTCCAC-TTCCTTA-TCGGAATCTCAGCATACATGGGAAG 211907 ||||||| || | | | ||| || || |||| | || | | |||||||| | Sbjct 1232 GTCCTTATGAGCTAAT--TGTTCTACATTTCTTACTTGGTGTAGCTTGTTACATGGGTCG 1175 Query 211908 ACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGC 211967 ||||||||||| | |||| | |||||||| |||||||| |||||| |||||||| Sbjct 1174 TGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGC 1115 Query 211968 ACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTC 212027 ||||| |||| ||| ||||| ||| | | || ||| | ||||| || || || Sbjct 1114 TCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTC 1055 Query 212028 AGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGA 212087 || ||||||||| |||| || || || || |||||||| ||| | |||||||| || || Sbjct 1054 TGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGA 995 Query 212088 ACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGC 212147 || |||||||||||||||||||| || ||| ||| || || ||| | ||||| || | Sbjct 994 GCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTC 935 Query 212148 ATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGG 212207 ||||| ||||||||| ||||| | || || ||| | ||| | |||||||| | Sbjct 934 CCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGA 875 Query 212208 TTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGT 212267 || || || | ||||||| ||||| ||||| ||||| || ||||| ||||| Sbjct 874 AAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGT 815 Query 212268 TGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAG 212327 || || ||||| || || || || | |||||||| ||||| |||||||| | Sbjct 814 AGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCG 755 Query 212328 AAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGG 212387 |||||| |||||| | || | |||||||| | || | ||||| || || | || Sbjct 754 TTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGG 695 Query 212388 TATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGC 212447 ||| |||| ||||| |||||||||||||| ||||| ||||||||||| || |||||| Sbjct 694 TATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAG 635 Query 212448 ATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGA 212507 |||| || || ||| |||| |||| || ||||| | || |||||||||||||| Sbjct 634 TCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGA 575 Query 212508 AGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 ||||||||| ||| | ||||| || |||||||| || ||| |||| Sbjct 574 AGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 530 >seq135 Length=947859 Score = 89.7 bits (98), Expect = 8e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 212023 TTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAA 212082 || || || ||||||||| |||| || || | || |||||||| ||| | ||||||||| Sbjct 378311 TTTTCTGATGGTATGCCTATAGGAATCTCCAGTACTTTCAACTTTATGATTGTATTCCAA 378252 Query 212083 GCAGAACATAACATCCTTATGCACCCATT 212111 || || || |||||||||||||||||||| Sbjct 378251 GCTGAGCAGAACATCCTTATGCACCCATT 378223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807494391093440