Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq6024 517 1e-141 seq135 84.2 2e-11 >seq6024 Length=163856 Score = 517 bits (572), Expect = 1e-141 Identities = 708/987 (72%), Gaps = 8/987 (1%) Strand=Plus/Minus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 || ||| | ||| |||| |||||| || || | ||| |||| ||||||||||| || Sbjct 1512 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1453 Query 170726 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 170785 |||||||| | | | || || || || || ||| | || ||||| ||||| ||| Sbjct 1452 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCACCT 1393 Query 170786 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 170845 || || ||||| || || || | ||||| ||| | || ||| | | ||||| ||||| Sbjct 1392 CCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAAT 1333 Query 170846 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 170905 || || |||||||| | |||| |||| || ||||| || || || || || || Sbjct 1332 ATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATA 1273 Query 170906 TGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATT 170965 |||||||| || | | || || ||||| ||||| || |||||||| || || || || Sbjct 1272 TGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTT 1213 Query 170966 TTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGA 171025 | || ||| | |||| | || ||||||||| | |||||||||| | | | Sbjct 1212 CTACATTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1153 Query 171026 CTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCA 171085 || || ||| | |||||||| ||| ||||| ||||| ||||| | || || ||| Sbjct 1152 CTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 1093 Query 171086 GTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 171145 || ||| | | |||||| | ||||| || || |||||||||||||| ||||| ||| Sbjct 1092 GTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATC 1033 Query 171146 TCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCC 171205 || ||||| |||||||| ||| | || ||||| || || |||||||| || |||||||| Sbjct 1032 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCA 973 Query 171206 TTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGT 171265 || || ||| ||| ||||| ||| | ||||| ||| || |||||||| ||||| ||| Sbjct 972 TTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGT 913 Query 171266 TCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGC 171325 || | || || ||| | | ||||| || || || || || || | || | || Sbjct 912 TCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 853 Query 171326 TATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGT 171385 || | ||||| ||||| |||||||| ||||| || || || |||||||| || || || Sbjct 852 TACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGC 793 Query 171386 AGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCT 171445 |||| |||||||| ||||| |||||||| |||||||| ||||| |||||| | ||| Sbjct 792 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCT 733 Query 171446 GTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 171505 | | |||||||| || | ||||| || || | ||||| | || ||||| |||||| Sbjct 732 GCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAAC 673 Query 171506 CTTAACGGATTCAACTTCAACCAATCAGTTGTAGAT--GCAA--ACGGAAAGATTGTACC 171561 || || || ||||| ||||||||||| || || ||| ||| || | | |||| Sbjct 672 CTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATACC 613 Query 171562 AACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAA 171621 |||| ||| || ||||| | || |||||||| |||||||||||||||||| | || Sbjct 612 ----TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 557 Query 171622 TGCACACAACTTCCCACTAGACCTAGC 171648 ||| || |||||||| ||||||||||| Sbjct 556 TGCTCATAACTTCCCTCTAGACCTAGC 530 Score = 376 bits (416), Expect = 3e-99 Identities = 706/1038 (68%), Gaps = 21/1038 (2%) Strand=Plus/Plus Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854 ||||| || | ||||| |||||| ||| || |||||||| || | || ||||| ||| Sbjct 37248 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 37307 Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 171914 || || || || ||||| || || | || | || ||||||||| ||| || || || Sbjct 37308 CTATTGCTCTTTCCTTGCGCCTATTTCGCCTTAGGGGGTTGGTTCACAGGTACAACCTTT 37367 Query 171915 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTA 171974 || ||||||||||| || ||||| | || || ||| | || || ||||| ||| Sbjct 37368 GTAACCTCATGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGCAACTTCTTA 37427 Query 171975 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGA 172034 || || ||||| || || |||| | || | | | ||| | | || || |||||||| Sbjct 37428 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTATGGGGT 37487 Query 172035 CCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 172094 || || |||||||| ||| || || |||| ||||||||| || | |||| ||||| Sbjct 37488 CCCGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTTTGTGGACTTTTGTT 37547 Query 172095 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGA 172154 || | || || | || ||||| |||||||| ||| | | || ||||| |||| || Sbjct 37548 GCTCTCCACGGTGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 37607 Query 172155 CTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCACG 172214 || | || ||||| || ||| | |||||||| | ||||| || || Sbjct 37608 TCCGTGCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTT 37667 Query 172215 AGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGT 172274 | || || || |||||| |||||||| | ||||||| || || ||| |||||| Sbjct 37668 TCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTTTTTGCGCCTAGTTTTGGT 37727 Query 172275 GTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAAT 172334 || ||||| || ||||| | || | || | || || || || || || || || Sbjct 37728 GTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAACTGGACGCTGAAC 37787 Query 172335 CCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACAT 172394 ||||||||||||||||| || || || || | |||| || | ||||| || || ||| Sbjct 37788 CCATTTCATATGATGGGGGTTGCCGGCGTATTAGGTGCTGCTCTGCTATGCGCTATTCAT 37847 Query 172395 GGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATT 172454 ||||| || ||| | || || || | |||||| || | | | | Sbjct 37848 GGTGCTACTGTAGAAAATACTTTATTTGAAGA---------------TG--GTGATGGTG 37890 Query 172455 CAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGATT 172514 ||| |||| ||| | || || | || || || | |||||||||||| ||| || Sbjct 37891 CAA-ATACA---TTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTT 37946 Query 172515 ACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTA 172574 || |||||| | || ||||| || || ||||| | || ||||| || ||| | | ||| Sbjct 37947 ACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 38006 Query 172575 CACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 172634 || ||| ||||||| || ||||| || | ||| | |||| || | || | || Sbjct 38007 CATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTC 38066 Query 172635 GGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 172694 ||||| || || || || | || || ||||| || ||||| ||||| | ||||| ||| Sbjct 38067 GGTCTGGCTCTGAATCTACGTGCCTATGACTTCGTTTCTCAGGAGATCCGTGCAGCGGAA 38126 Query 172695 GACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCA 172754 || || || ||||| || ||||||||||| || ||||| | || |||||||| | || Sbjct 38127 GATCCTGAATTTGAGACTTTCTACACTAAAAATATTCTCTTAAACGAAGGTATTCGTGCT 38186 Query 172755 TGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCA 172814 |||||| | || ||||| || ||||| ||| || | ||||| || || || | ||| Sbjct 38187 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCA 38246 Query 172815 CGAGGCAACGCACTATAA 172832 || || ||||| || ||| Sbjct 38247 CGTGGAAACGCTCTTTAA 38264 >seq135 Length=947859 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 171119 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 171178 || |||||||||||||| |||| ||||| |||| |||||||| ||| | || |||||| Sbjct 378311 TTTTCTGATGGTATGCCTATAGGAATCTCCAGTACTTTCAACTTTATGATTGTATTCCAA 378252 Query 171179 GCAGAACACAACATACTAATGCACCCCTT 171207 || || || ||||| || |||||||| || Sbjct 378251 GCTGAGCAGAACATCCTTATGCACCCATT 378223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570225858759360