Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq33 197 2e-45 seq304 111 2e-19 seq241 105 8e-18 >seq33 Length=1871104 Score = 197 bits (218), Expect = 2e-45 Identities = 414/609 (68%), Gaps = 6/609 (1%) Strand=Plus/Plus Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 ||| || |||||||||||||||| ||||||||||| || | ||||| || || || Sbjct 634286 CAAGCACGCGAAATCGCAGTGCAAACCCTCGTCTCGCGAGATCAACTCGTTAGAGAAAGT 634345 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419 | ||| ||||| | || |||||||| ||||||||||||| || |||||| || Sbjct 634346 TAATCCCGGCATCAACCCGCGCTTTTTTAGCCAAAATATGGCGCAAAAACTTCCAGAGAA 634405 Query 33420 GAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCGCTGTCA 33477 || || || || || ||| ||||| || | ||||||||| | || | || | | Sbjct 634406 AAATATCCCCTCCAC-GCATGCAAAAGCGACAAGTCTCTCAGCGAAAGACTCCGATC-CG 634463 Query 33478 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537 | ||||| | ||||| || ||||| || |||||||| | || || || || Sbjct 634464 TCGATCCATCTCAAGGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTCTCGATCGCG 634523 Query 33538 TTAAAGAGATAGtttttt-tCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33596 | ||| | || | || || || | |||||| | |||||| || | ||||||||||| Sbjct 634524 TGAAATA-ATCGATTCTTCTCGGTCGAATCTTTGATATAAGTCTCCAGTAAAAGACTATA 634582 Query 33597 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33656 ||| || || ||||| || ||||| || || ||||| || |||||| | |||||| | Sbjct 634583 CATCTCAGAGTGAATATTCTCAATCGCGATTTGAAAGCCATAGAAAGCACGAGCCTCAGA 634642 Query 33657 AATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGC 33716 | || || || | ||| || | || | |||||| || || || ||| ||| Sbjct 634643 GACTTGGACCTCCTTCATAAAACGACCGGCAAGATTTTCGAGAACGATGCCATCAGAGGC 634702 Query 33717 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 33776 ||||| || || | ||||| ||| || | ||| || || | ||||| | ||| Sbjct 634703 GGCAAAGAAGGCAAGGACATGAGATATGAAGTGTTTCTCATCGGAGGTTAGGGCCTCCCA 634762 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 | || ||||| ||||| ||| || || || | |||||||| || ||||| || || Sbjct 634763 TTGGCGGAGATCTTGAGATAGATCGACCTCCTCTGCAGTCCAAAAGGAGGCCTCGGCTTT 634822 Query 33837 TTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATT 33896 || ||||| | ||| || | |||||||||||||| || |||| || ||| || Sbjct 634823 CTTGTACATTTCCCATATCTGTGGGTATTGGATTGGGAACATGCAGAATCGATCTGGGTT 634882 Query 33897 TGGTGCAAG 33905 ||| || || Sbjct 634883 TGGGGCTAG 634891 >seq304 Length=2135540 Score = 111 bits (122), Expect = 2e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| ||||| || | ||| |||||||| || || |||||| | | ||| | | || Sbjct 1419391 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAACCATCTCTGAGACATCAAATGA 1419450 Query 63672 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63730 || || | |||||||| || ||||| | ||| |||||||| || || || | ||| | Sbjct 1419451 TATGTTTTGATAGCTGAATCAATATCATCCTTG-TGAATTCCAACAGCAACCCTCATCAG 1419509 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTT-TATTTTCAACAAGTAGGATTTTTCCA 63789 |||||||||||| || || || | ||| | || | ||| || | |||||| |||||| Sbjct 1419510 CATGTGCTGAGGCCTCTCTAC-AACTTTTCCTTGAACTTTTAAGAGGTAGGACCTTTCCA 1419568 Query 63790 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 ||| || || ||||| || | || ||||||||| || ||||| || Sbjct 1419569 GAGTCTTGAACCCAAAGTAATCATAGTCAAAGTCTCGATCATAAATGAT 1419617 Score = 89.7 bits (98), Expect = 6e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 63362 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63421 || |||| |||||| ||||| | || | || || | |||| | || | ||||||||| Sbjct 1419044 CCTTTTGCCTCCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAACATTGG 1419103 Query 63422 AATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATT 63481 || |||||| || ||| | ||||| || || |||||||| || |||||||||| || Sbjct 1419104 AACAATACCATTAGATGTTCCATTTGTTCCACGAATATAGCTGCCTGTGGCACGAATGTT 1419163 Query 63482 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63541 || || | ||| ||||| || || ||| || | || || ||||| || Sbjct 1419164 GTGAACAGAGACACCAATTCCTCCAGCTGATTTGCTAATGACAGCACACTCCTTTAAAGT 1419223 Query 63542 GTCATAGATACCCTCTATGCTATCATCGATCATG 63575 ||||| || || || || |||||||| ||||| Sbjct 1419224 ATCATATATGCCTTCAATACTATCATCTTTCATG 1419257 >seq241 Length=1151104 Score = 105 bits (116), Expect = 8e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| ||||| | ||| | ||| |||| |||| | |||| | |||||||||||| || Sbjct 845254 TCCTCCATGATCAACGTAGCGAGCAGTGTCATTAAACACTCGAAGCATTGGAATAATGCC 845313 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || || | ||||| || || | || || || ||| | |||||||||||| | || Sbjct 845314 ATTGGAAGTCCCATTTGTCCCACAAATGTAACTGCCAGTAGCACGAATATTATGGACAGA 845373 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 || || ||||| || || | || || | || || ||| || || ||| | || Sbjct 845374 AAGGCCAATTCCTCCAGCTAACTTGCTAATAACAGCACACTCTTTCAAAGTATCAAAAAT 845433 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 ||||| ||||||||||| ||||| | |||||||||||| Sbjct 845434 TCCCTCAATGCTATCATCTTTCATGCACACAAGAAAACAGCTA 845476 Score = 82.4 bits (90), Expect = 1e-10 Identities = 114/155 (74%), Gaps = 6/155 (4%) Strand=Plus/Plus Query 63129 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 63188 |||||| ||| || || || |||||| || |||| |||||| ||||| || || Sbjct 844734 TACAATTTTTCAAATTCTTCACCCCAACAATCAGCCAAACCAGGAGCTTCATTGGGGCAA 844793 Query 63189 ATCAACGACCACTCTCCGTCATCCTTC--ACTCGTTTCATAAAGAGATCAGGAATCCAAA 63246 | || ||||| | ||| |||| |||| || ||||||||||||||||||||||| Sbjct 844794 AATAAAGACCAGCTGCTATCA--CTTCGGACTCTTTCCATAAAGAGATCAGGAATCCAAA 844851 Query 63247 GAGCTATA-AATAGATCTCTGGTTCTATGTTCCTC 63280 |||| ||| |||| |||||| | || | |||| || Sbjct 844852 GAGC-ATAGAATAAATCTCTAGCTCGACGTTCTTC 844885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622900292075840