Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq271 93.3 4e-14 seq100 86.0 6e-12 seq813 84.2 2e-11 >seq271 Length=609135 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||| |||||||| ||||| |||||||||||| | |||| | || |||||| | ||| Sbjct 324199 GACAAGGAAGGGATCCCTCCTGATCAACAAAGATTGATTTTTGCTGGTAAACAATTGGAA 324140 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| ||||| | || || || || || || ||||| ||| | || |||| || Sbjct 324139 GATGGTAGAACTCTTGCAGATTACAATATCCAGAAGGAATCAACTCTTCACTTGGTTTTG 324080 Query 26982 AGACTTAGAGGAGGAA 26997 || ||||||||||||| Sbjct 324079 AGGCTTAGAGGAGGAA 324064 >seq100 Length=1654266 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA---TCA 26825 |||||| | ||||| ||||| | ||||| || | |||||| | || | ||| ||| Sbjct 546799 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACCATCACCCTTGAGGTGGAAAGCTCA 546858 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||| || || | || ||| || ||| ||||| |||||||| || || ||| Sbjct 546859 ---GACACTATTGACAACGTAAAAGCCAAAATTCAGGACAAGGAAGGGATTCCCCCTGAT 546915 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || || | || | | |||||||| | ||||||| | | | | |||||| Sbjct 546916 CAGCAGAGGTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGTACCCTTGCGGACTAT 546975 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||||||||| || || || |||| |||| || | |||||||| |||| Sbjct 546976 AACATTCAAAAGGAGTCAACCCTCCACTTGGTTCTCCGTCTTAGAGGTGGAA 547027 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA---TCA 26825 |||||| | ||||| ||||| | ||||| || | |||||| | || | ||| ||| Sbjct 553868 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACCATCACCCTTGAGGTGGAAAGCTCA 553927 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||| || || | || ||| || ||| ||||| |||||||| || || ||| Sbjct 553928 ---GACACTATTGACAACGTAAAAGCCAAAATTCAGGACAAGGAAGGGATTCCCCCTGAT 553984 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || || | || | | |||||||| | ||||||| | | | | |||||| Sbjct 553985 CAGCAGAGGTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGTACCCTTGCGGACTAT 554044 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||||||||| || || || |||| |||| || | |||||||| |||| Sbjct 554045 AACATTCAAAAGGAGTCAACCCTCCACTTGGTTCTCCGTCTTAGAGGTGGAA 554096 >seq813 Length=767751 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 || || ||||| || ||||| ||||| || ||| | |||| | ||||| ||| | ||| Sbjct 436420 GATAAGGAAGGCATCCCTCCTGATCAGCAGAGATTGATTTTTGCTGGCAAGCAATTGGAA 436361 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| ||| | || ||||||||||| || ||||| || | || ||||| ||| Sbjct 436360 GATGGCCGAACTCTTGCTGATTATAACATTCAGAAGGAATCAACACTTCACCTGGTTCTG 436301 Query 26982 AGACTTAGAGGAGGAA 26997 || ||||||||||||| Sbjct 436300 AGGCTTAGAGGAGGAA 436285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478626356721280