Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq33 95.1 3e-14 seq304 84.2 6e-11 >seq33 Length=1871104 Score = 95.1 bits (104), Expect = 3e-14 Identities = 333/512 (65%), Gaps = 21/512 (4%) Strand=Plus/Minus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGT--TCATTCGCGGAACGTC 22495 || ||||| || ||||| ||| |||||| || || || || ||||| || | | Sbjct 634495 AAAAAGGCTGAGTGGGCCTTGAGATGGATCGACG--GATCGGAGTCTTTCGCTGAGAGAC 634438 Query 22496 TTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTT 22555 || | || ||||| || || || || || || |||||| ||||| || || |||| Sbjct 634437 TTGTCGCTTTTGCATGCGTGGAGGGGATATTTTTCTCTGGAAGTTTTTGCGCCATATTTT 634378 Query 22556 GGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAG 22615 |||||||||| || | | |||||||| |||| || || || ||||| || |||| Sbjct 634377 GGCTAAAAAAGCGCGGGTTGATGCCGGGATTAACTTTCTCTAACGAGTTGATCTCGCGAG 634318 Query 22616 ATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAA-- 22673 | |||||| | || |||||| ||||| |||| || | | | | | || Sbjct 634317 ACGAGGGTTTGCACTGCGATTTCGCGTGCTTGCTCTACAG------TTTGTTGAAGAAGA 634264 Query 22674 ACTTCCATATGAAAC-TGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTAT 22732 | || || | | | ||| | || | ||||||| ||| |||| | | Sbjct 634263 AGTTGAATGAGGAGCGTGTGAAGGGAATAGTGCGTGATGCAGTGGAAATTGAGAGGGAGT 634204 Query 22733 TTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATG--CCGA-ATCA-ATGAGT 22788 || | ||||| ||| | || | | |||||| ||| |||| | | ||||| Sbjct 634203 TTGTATGCGACGCGCTTCCTTG----CGCTTTGGTAGGGATGAACCGAGAGCTGATGAGC 634148 Query 22789 ACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTAT 22848 |||||| | ||||| || ||| | | || | | || || | | ||| || Sbjct 634147 CAGTATATTGAGTTTGTGGCTGATAGGTTGTTGGGTGCGCTTGGGTGCGGGAAGATATAC 634088 Query 22849 AACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTC 22908 || || ||| || ||||| |||||||| || || ||| | |||||||||| |||||| Sbjct 634087 AATGTGACTAACCCTTTTGATTGGATGGAGCTGATCTCATTGCAAGGAAAGACTAATTTC 634028 Query 22909 TTCGAAAAAAGAGTTGGTGAATACCAAAAAGC 22940 || |||||||||||||||||||| || || || Sbjct 634027 TTTGAAAAAAGAGTTGGTGAATATCAGAAGGC 633996 >seq304 Length=2135540 Score = 84.2 bits (92), Expect = 6e-11 Identities = 155/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| || || || || | ||| || | ||| | |||||| | ||| | Sbjct 1419256 ATGAAAGATGATAGTATTGAAGGCATATATGATACTTTAAAGGAGTGTGCTGTCATTAGC 1419197 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG-CACAGAACAGTTACAT 363740 || || || ||||||||||| || | ||||| |||||| ||||| ||| || || Sbjct 1419196 AAATCAGCTGGAGGAATTGGTGTCTCTGTTCACAACATTCGTGCCACAG-GCAGCTATAT 1419138 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| || ||| ||| || ||||| | ||||| ||| | || |||||| | |||| Sbjct 1419137 TCGTGGAACAAATGGAACATCTAATGGTATTGTTCCAATGTTGCGGGTGTTTAATGATAC 1419078 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 ||| | || || || || || ||||| || | ||||| |||| Sbjct 1419077 TGCCCGTTATGTTGATCAAGGAGGAGGCAAAAGGAAAGGTACGTT 1419033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303253003910768