Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq167 107 2e-18 seq813 93.3 4e-14 seq1476 87.8 2e-12 seq41 86.0 5e-12 >seq167 Length=3484751 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || || || ||| | ||||| | ||||||||| | Sbjct 2202951 ATGCAGATCTTCGTTAAGACTTTGACAGGCAAAACCATTACTCTTGAAGTCGAGAGCTCT 2202892 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| | ||||| ||||| ||||| ||||| || || || || || Sbjct 2202891 GATACCATCGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCGGACCAG 2202832 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||| | || || || ||||||||||| | |||| | | ||||||||| Sbjct 2202831 CAGAGATTGATCTTCGCTGGAAAACAACTCGAAGACGGAAGAACCCTTGCCGATTATAAT 2202772 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || ||||| ||| | ||||| || | | ||| ||||||| Sbjct 2202771 ATTCAGAAGGAATCCACACTGCATTTGGTTCTCCGTTTGCGAGGAGG 2202725 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | ||||| || | || ||| | || || || | | Sbjct 1287711 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACAATCACCCTTGAGGTGGAAAGCTCC 1287770 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | |||||| |||||| |||||||| || || || || || || Sbjct 1287771 GACACCATTGACAATGTCAAAGCAAAGATCCAGGACAAAGAGGGAATTCCCCCAGACCAG 1287830 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA-TGACAGAAACGT-CAGCGATTATA 24168 ||||| || || | | || ||||||||||| || | | | || | || || || | Sbjct 1287831 CAGAGGCTTATCTTTGCTGGTAAGCAACTCGAGGACGGGCGTACACTTGCA--GACTACA 1287888 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 | || ||||| ||||| ||| | ||||| ||| | ||||||| || || Sbjct 1287889 ATATCCAAAAGGAATCCACACTCCATTTGGTGCTGCGATTGAGGGGTGG 1287937 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 23982 CCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTC 24041 ||| ||| ||||| | || || ||||| | || || || | ||||| |||| ||| Sbjct 2203188 CCATACAGTATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACTATTACTCTCGAGGTC 2203129 Query 24042 GAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCT 24101 ||| | ||| || || || | ||||| ||||| || || ||||| || || Sbjct 2203128 GAGAGCTCCGATACAATTGATAACGTCAAGGCCAAGATCCAAGATAAGGAAGGAATTCCA 2203069 Query 24102 CCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAG- 24160 || ||||||||||| |||| | || ||||||||| || ||||||| | | || | || Sbjct 2203068 CCGGATCAACAGAGGTTGATCTTCGCCGGCAAGCAGCTTGAAGATGGCCG-CACATTAGC 2203010 Query 24161 CGATTATAACATTCAAAAAGAATCTACA 24188 |||||| ||||| || || || || ||| Sbjct 2203009 CGATTACAACATCCAGAAGGAGTCAACA 2202982 >seq813 Length=767751 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/143 (75%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 || || |||||||| ||||| ||||| |||||| |||||| | ||||||||| | ||| Sbjct 436420 GATAAGGAAGGCATCCCTCCTGATCAGCAGAGATTGATTTTTGCTGGCAAGCAATTGGAA 436361 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| | ||| | |||||||||||||| || ||||| ||| |||| | || | Sbjct 436360 GATGGCCGAACTCTTGCTGATTATAACATTCAGAAGGAATCAACACTTCACCTGGTTCTG 436301 Query 24204 AGATTGAGAGGAGG-ACTATAAT 24225 || | |||||||| ||||| || Sbjct 436300 AGGCTTAGAGGAGGAACTATGAT 436278 >seq1476 Length=5289327 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || ||||| || | || ||| |||| || ||| || | Sbjct 643204 ATGCAGATTTTCGTTAAGACCTTGACTGGGAAGACCATCACCCTCGAGGTTGAGAGCAGC 643145 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || || ||| ||| ||||| || ||||| || || || || Sbjct 643144 GACACTATTGACAACGTGAAGGCAAAAATTCAAGACAAGGAGGGCATCCCACCAGACCAG 643085 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || ||| || ||||| || || | | | | | |||||||||| Sbjct 643084 CAGAGGCTGATCTTCGCCGGAAAACAACTAGAGGACGGGCGTACCTTGGCCGATTATAAC 643025 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 ||||| || || ||||| |||| Sbjct 643024 ATTCAGAAGGAGTCTACCCTTCA 643002 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || |||||||| | ||||| | || || || | | Sbjct 643432 ATGCAGATCTTCGTCAAGACCTTGACTGGAAAGACTATTACTCTGGAGGTTGAAAGTAGC 643373 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||||| || || ||||| || || || ||||| Sbjct 643372 GACACCATCGATAATGTCAAGGCAAAGATTCAGGATAAGGAAGGAATTCCCCCAGATCAG 643313 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || ||| || || || || || | | | | | |||||| ||| Sbjct 643312 CAGAGGCTGATCTTCGCCGGAAAACAGCTAGAGGACGGGCGTACCTTGGCCGATTACAAC 643253 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 ||||| || || || || |||| Sbjct 643252 ATTCAGAAGGAGTCCACCCTTCA 643230 >seq41 Length=2736928 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | || || ||||| |||| || || |||| ||| | || || ||| | Sbjct 677469 AAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAGTCT 677410 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||||||||| | ||||| ||||| ||||| ||||| || ||||| || Sbjct 677409 TCTGACACCATCGATAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCAGAC 677350 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| ||||||| | || ||| ||||| || || |||| | | | | ||| || Sbjct 677349 CAGCAGCGACTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACTCTTGCCGACTAC 677290 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| || || ||||| || Sbjct 677289 AACATCCAGAAGGAATCCAC 677270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429904435173720