Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq100 107 2e-18 seq1476 98.7 8e-16 seq813 93.3 4e-14 seq167 87.8 2e-12 >seq100 Length=1654266 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| ||||| || || || || ||||| ||| | || ||| | Sbjct 546799 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACCATCACCCTTGAGGTGGAAAGCTCA 546858 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| ||| |||| |||||| |||||| || || ||||| | ||| |||||| Sbjct 546859 GACACTATTG-ACAACGTAAAAGCCAAAATTCAGGACAAGGAAGGGATTCCCCCTGATCA 546917 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || | || | ||| |||||||| || ||||||| | ||| | || || ||||| Sbjct 546918 GCAGAGGTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGTACCCTTGCGGACTATAA 546977 Query 115465 CATTCAAAAAGAGTCTAC 115482 ||||||||| ||||| || Sbjct 546978 CATTCAAAAGGAGTCAAC 546995 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| ||||| || || || || ||||| ||| | || ||| | Sbjct 553868 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACCATCACCCTTGAGGTGGAAAGCTCA 553927 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| ||| |||| |||||| |||||| || || ||||| | ||| |||||| Sbjct 553928 GACACTATTG-ACAACGTAAAAGCCAAAATTCAGGACAAGGAAGGGATTCCCCCTGATCA 553986 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || | || | ||| |||||||| || ||||||| | ||| | || || ||||| Sbjct 553987 GCAGAGGTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGTACCCTTGCGGACTATAA 554046 Query 115465 CATTCAAAAAGAGTCTAC 115482 ||||||||| ||||| || Sbjct 554047 CATTCAAAAGGAGTCAAC 554064 >seq1476 Length=5289327 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| || || || | || || || ||||| ||| |||| ||| |||| Sbjct 643204 ATGCAGATTTTCGTTAAGACCTTGACTGGGAAGACCATCACCCTCGAGGTTGAGAGCAGC 643145 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| ||| |||| || || ||||||| || || || ||| |||| || || Sbjct 643144 GACACTATTG-ACAACGTGAAGGCAAAAATTCAAGACAAGGAGGGCATCCCACCAGACCA 643086 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || || || | || || |||||| |||| || | ||| ||||||||||||| Sbjct 643085 GCAGAGGCTGATCTTCGCCGGAAAACAACTAGAGGACGGGCGTACCTTGGCCGATTATAA 643026 Query 115465 CATTCAAAAAGAGTCTAC 115482 |||||| || |||||||| Sbjct 643025 CATTCAGAAGGAGTCTAC 643008 >seq813 Length=767751 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| |||||| |||| ||||||||| ||| | |||| ||| ||||| ||||| ||| Sbjct 436420 GATAAGGAAGGCATCCCTCCTGATCAGCAGAGATTGATTTTTGCTGGCAAGCAATTGGAA 436361 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| | ||| | || |||||||||||||| || || || || | || |||| || Sbjct 436360 GATGGCCGAACTCTTGCTGATTATAACATTCAGAAGGAATCAACACTTCACCTGGTTCTG 436301 Query 115499 AGATTGCGAGGAGGAA 115514 || | ||||||||| Sbjct 436300 AGGCTTAGAGGAGGAA 436285 >seq167 Length=3484751 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| |||||||||||||| || || || |||||||||||| |||| ||| | Sbjct 1288622 AATGCAGATTTTTGTCAAAACCCTGACAGGGAAAACCATTACCCTCGAGGTTGAGAGCTC 1288681 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||| || ||||| || || ||||| || || || || | ||| || | Sbjct 1288682 TGACACAATT-GACAATGTGAAGGCTAAAATCCAGGACAAGGAGGGTATTCCCCCGGACC 1288740 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | ||| || | |||| ||| || |||||| | ||||||| |||| | || || |||| Sbjct 1288741 AACAACGATTGATTTTTGCTGGTAAACAACTTGAAGATGGACGAACCCTTGCAGACTATA 1288800 Query 115464 ACATTCAAAAAGAGTCTACT 115483 | || || |||||||| ||| Sbjct 1288801 ATATCCAGAAAGAGTCCACT 1288820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425312772306880