Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq33 196 6e-45 seq241 123 3e-23 seq304 114 2e-20 >seq33 Length=1871104 Score = 196 bits (216), Expect = 6e-45 Identities = 411/602 (68%), Gaps = 8/602 (1%) Strand=Plus/Plus Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 ||| || |||||||||||||| | ||||||||||| || || ||||| || || || Sbjct 634286 CAAGCACGCGAAATCGCAGTGCAAACCCTCGTCTCGCGAGATCAACTCGTTAGAGAAAGT 634345 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAA 32775 | ||| ||||| | || |||||||| ||||||||||||| |||||| | ||||| | Sbjct 634346 TAATCCCGGCATCAACCCGCGCTTTTTTAGCCAAAATATGG-CGCAAAAACTTCCAGAGA 634404 Query 32776 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCGCTGTCA 32834 | || || || || || ||||| || | ||||||||| | || | || | | Sbjct 634405 AAAATATCCCCTCCACGCATGCAAAAGCGACAAGTCTCTCAGCGAAAGACTCCGATC-CG 634463 Query 32835 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCA 32894 | ||||| | ||||| || ||||| || |||||||| | ||||| || || Sbjct 634464 TCGATCCATCTCAAGGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTCTCGATCGCG 634523 Query 32895 TTAAAGAGATAGtttttt-tCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953 | ||| | || | || || || | |||||| | ||| || || | ||||||||||| Sbjct 634524 TGAAATA-ATCGATTCTTCTCGGTCGAATCTTTGATATAAGTCTCCAGTAAAAGACTATA 634582 Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAG-AAGCATCTAGCCTCGG 33012 ||| || || ||||| || ||||| || |||||||| || ||| ||||| | |||||| | Sbjct 634583 CATCTCAGAGTGAATATTCTCAATCGCGATTTGAAAGCCATAGAAAGCA-CGAGCCTCAG 634641 Query 33013 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 33072 | || || || | ||| || | || | |||||| || || || ||| || Sbjct 634642 AGACTTGGACCTCCTTCATAAAACGACCGGCAAGATTTTCGAGAACGATGCCATCAGAGG 634701 Query 33073 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 33132 | ||||| || || | ||||| ||| || | ||| || || | ||||| | || Sbjct 634702 CGGCAAAGAAGGCAAGGACATGAGATATGAAGTGTTTCTCATCGGAGGTTAGGGCCTCCC 634761 Query 33133 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192 | | || ||||| ||||| ||| || || || | |||||||| || ||||| || | Sbjct 634762 ATTGGCGGAGATCTTGAGATAGATCGACCTCCTCTGCAGTCCAAAAGGAGGCCTCGGCTT 634821 Query 33193 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGAT 33252 | || ||||| | ||| || | | ||||| ||||| || || |||| || ||| | Sbjct 634822 TCTTGTACATTTCCCATATCTGTGGGTATTGGATTGGGAACATGCAGAATCGATCTGGGT 634881 Query 33253 TT 33254 || Sbjct 634882 TT 634883 >seq241 Length=1151104 Score = 123 bits (136), Expect = 3e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| ||||| | ||| | ||| |||| |||| | |||| | |||||||||||| || Sbjct 845254 TCCTCCATGATCAACGTAGCGAGCAGTGTCATTAAACACTCGAAGCATTGGAATAATGCC 845313 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 |||||| || ||||| ||||| | || || || ||| | |||||||||||| | || Sbjct 845314 ATTGGAAGTCCCATTTGTCCCACAAATGTAACTGCCAGTAGCACGAATATTATGGACAGA 845373 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 || || ||||| || || | || || | || || ||| || |||||| | || Sbjct 845374 AAGGCCAATTCCTCCAGCTAACTTGCTAATAACAGCACACTCTTTCAAAGTATCAAAAAT 845433 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 ||||| || |||||||| ||||| | |||||||||||| Sbjct 845434 TCCCTCAATGCTATCATCTTTCATGCACACAAGAAAACAGCTA 845476 >seq304 Length=2135540 Score = 114 bits (126), Expect = 2e-20 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| ||||| || | ||| |||||||| ||||| |||||| | | ||| | | || Sbjct 1419391 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAACCATCTCTGAGACATCAAATGA 1419450 Query 63527 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || | |||||||| || ||||| | ||| |||||||| || || || | ||| | Sbjct 1419451 TATGTTTTGATAGCTGAATCAATATCATCCTTG-TGAATTCCAACAGCAACCCTCATCAG 1419509 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTT-TATTTTCAACAAGTAGGATTTTTCCA 63644 |||||||||||| || || || | ||| | || | ||| || | |||||| |||||| Sbjct 1419510 CATGTGCTGAGGCCTCTCTAC-AACTTTTCCTTGAACTTTTAAGAGGTAGGACCTTTCCA 1419568 Query 63645 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||| || || ||||| || | || ||||||||| || ||||| || Sbjct 1419569 GAGTCTTGAACCCAAAGTAATCATAGTCAAAGTCTCGATCATAAATGAT 1419617 Score = 111 bits (122), Expect = 2e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 63217 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63276 || |||| |||||| ||||| | || | || || | |||| | || | ||||||||| Sbjct 1419044 CCTTTTGCCTCCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAACATTGG 1419103 Query 63277 AATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATT 63336 || ||||||||| ||||| ||||| || || |||||||| || |||||||||| || Sbjct 1419104 AACAATACCATTAGATGTTCCATTTGTTCCACGAATATAGCTGCCTGTGGCACGAATGTT 1419163 Query 63337 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63396 || || | ||| ||||| || || ||| || | || || ||||| || Sbjct 1419164 GTGAACAGAGACACCAATTCCTCCAGCTGATTTGCTAATGACAGCACACTCCTTTAAAGT 1419223 Query 63397 ATCATAGATGCCCTCTATACTATCATCCATCATG 63430 |||||| ||||| || ||||||||||| ||||| Sbjct 1419224 ATCATATATGCCTTCAATACTATCATCTTTCATG 1419257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633584287510400