Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq6024 598 5e-166 seq456 161 1e-34 seq54 95.1 1e-14 >seq6024 Length=163856 Score = 598 bits (662), Expect = 5e-166 Identities = 713/962 (74%), Gaps = 4/962 (0%) Strand=Plus/Minus Query 166081 AACCGTCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACC 166140 ||||||||||| |||| |||||||| ||||||| || ||| | ||| | ||||| Sbjct 1485 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 1426 Query 166141 ATCTGT-TTCATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGATCCGTGA 166199 ||||| || || |||||||| | || |||||||| || ||||| ||||| || ||||| Sbjct 1425 -TCTGTATTTATTATCGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGA 1367 Query 166200 GCCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCCTC 166259 || || | || |||||| | ||||| ||||| || || |||||||| || | || | Sbjct 1366 ACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 1307 Query 166260 CTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAATG 166319 || || || ||| | || || || || || |||||||| ||||| |||||||||| Sbjct 1306 TTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATG 1247 Query 166320 GCTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCATCTATGC 166379 | | || || || ||||||| |||| | || | || ||| | | || | | Sbjct 1246 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACATTTCTTACTTGGTGTAGCTTG 1187 Query 166380 CTACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGT 166439 |||||||||||||| |||||| | || ||| || |||||||| ||||||||| || Sbjct 1186 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGT 1127 Query 166440 AGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCA 166499 ||||| || || ||||||||||| || | || || ||| || ||||||| | ||||| Sbjct 1126 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCA 1067 Query 166500 AGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGT 166559 ||| || ||||| | ||||| || || ||| ||| || ||||||| ||| |||| Sbjct 1066 AGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGT 1007 Query 166560 CTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGT 166619 ||||| || |||||||||||||| |||||||| || || ||| | || ||||| ||||| Sbjct 1006 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGT 947 Query 166620 ATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCG-TCC 166678 |||||| || || || ||| || ||||| || | || || || | | | | || Sbjct 946 ATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGATCA 888 Query 166679 GTGAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGA 166738 | || ||||| |||| ||| ||| || | ||||||| || |||||||| ||||| | Sbjct 887 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAA 828 Query 166739 CCTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCT 166798 | || || ||||| || ||||||||||| || || || ||||||||||||| ||| | Sbjct 827 CTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTT 768 Query 166799 TCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGT 166858 ||||||| ||||| || | || |||||| | || || |||||||| || ||||| |||| Sbjct 767 TCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGT 708 Query 166859 TTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGT 166918 | |||||| | ||| ||||||| ||||| |||||||| || |||||||| |||||||| | Sbjct 707 TCACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAAT 648 Query 166919 CCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTG 166978 || | | ||| |||| |||||||| | || || ||||| ||| | | ||||||||| Sbjct 647 CCGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTA 588 Query 166979 GTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTTGCTG 167038 || ||||||||||| ||||| || ||||||||||| ||||||||||| || || |||| Sbjct 587 ACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTG 528 Query 167039 CT 167040 || Sbjct 527 CT 526 Score = 544 bits (602), Expect = 9e-150 Identities = 733/1017 (72%), Gaps = 8/1017 (1%) Strand=Plus/Plus Query 167300 TTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 167359 |||||| | ||||||||||| | | ||||| || || ||||| || ||||| || Sbjct 37248 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 37307 Query 167360 TTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 167419 || | || ||||| || ||| | || | || || ||| | || || || || ||| Sbjct 37308 CTATTGCTCTTTCCTTGCGCCTATTTCGCCTTAGGGGGTTGGTTCACAGGTACAACCTTT 37367 Query 167420 GTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACC--TTG--AGGGTGCTAATTT 167475 || || ||||||||||| || ||||| ||||| | ||| ||| ||| | || Sbjct 37368 GTAACCTCATGGTATACCCATGGATTGGC---TAGTTCCTATTTGGAAGGCTGCAACTTC 37424 Query 167476 TCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTG 167535 | | || || ||||| || ||||||||| | | | | |||||| | | |||| || Sbjct 37425 T-TAACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTATG 37483 Query 167536 GGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTT 167595 |||||| || | || |||||||| | | ||||| || | || || | ||| |||| Sbjct 37484 GGGTCCCGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTTTGTGGACTTT 37543 Query 167596 TGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAG 167655 ||| || |||||||| || || | || ||||| |||||| | || |||||||| | Sbjct 37544 TGTTGCTCTCCACGGTGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGC 37603 Query 167656 TAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTT 167715 | || || | || ||||| ||||| || || || |||||||| |||||||| || Sbjct 37604 TCGATCCGTGCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTT 37663 Query 167716 TGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTT 167775 ||| ||||| || || || ||||| || || ||||| ||||||| ||||| || || Sbjct 37664 TGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTTTTTGCGCCTAGTTT 37723 Query 167776 TGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCT 167835 |||||| ||||| |||||| ||||| | || || | || || || |||||||||||||| Sbjct 37724 TGGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAACTGGACGCT 37783 Query 167836 CAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAAT 167895 ||||| || ||||||||||| ||||| || | |||| | ||| |||| | || || Sbjct 37784 GAACCCATTTCATATGATGGGGGTTGCCGGCGTATTAGGTGCTGCTCTGCTATGCGCTAT 37843 Query 167896 CCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAA 167955 ||||||| ||| ||||| |||||| | | |||||||||||| ||||| || ||| Sbjct 37844 TCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCG 37903 Query 167956 AGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTG 168015 || ||| | | ||||| | || ||||||||||| ||||| || |||||||| || || Sbjct 37904 TGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTG 37963 Query 168016 GTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTT 168075 ||| ||||| ||||| ||||||| |||||| |||||||| || ||||||||| | || Sbjct 37964 GTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 38023 Query 168076 CGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCT 168135 || || || | || | |||| ||| || |||| | ||||||| || || ||||| Sbjct 38024 TGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAATCT 38083 Query 168136 TCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAAC 168195 ||||| |||||||| || |||||||| | | ||||| || ||||| || ||||| || Sbjct 38084 ACGTGCCTATGACTTCGTTTCTCAGGAGATCCGTGCAGCGGAAGATCCTGAATTTGAGAC 38143 Query 168196 TTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGA 168255 |||||| || ||||| || ||| | || ||||| | ||||| |||||||| | ||| Sbjct 38144 TTTCTACACTAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGA 38203 Query 168256 CCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 || || ||||||||| || ||||||| || || || | ||| | || |||||||| Sbjct 38204 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 38260 >seq456 Length=400266 Score = 161 bits (178), Expect = 1e-34 Identities = 315/455 (69%), Gaps = 14/455 (3%) Strand=Plus/Minus Query 167771 TCGTTTGGTGTTGCAGCGATATTTAGATTC--CTACTATTCCTACAGGGTTTCCATAACT 167828 || ||| |||| ||| | |||||| ||||| || || || | | || |||| |||||| Sbjct 321070 TCCTTTTGTGTAGCAACTATATTTCGATTCATCTTCTTTTTCCA-AGAGTTTT-ATAACT 321013 Query 167829 GGACGCTCAACCCTTTCCATATGATGGGAGTTGCTGG--TATCCTA---GGCGGTGCATT 167883 || | | ||||| || ||||||| ||||||||| || ||| || ||| ||| | Sbjct 321012 AGATGTTGAACCCATTTCATATGACGGGAGTTGCCGGCATATTGTATTGGGCACTGCTCT 320953 Query 167884 GCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGC 167943 ||| | | || ||| |||||| ||||| || ||| | | |||||||||||| | Sbjct 320952 GCTATGCACTATTCATAGTGTTATTGTAGAAAAGACTTTATCTGAAGATGGTGATGGTGT 320893 Query 167944 AAACACTTTCAAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGC 168003 ||||||||| | | ||| | | ||||| || ||||||||||| | |||||||| Sbjct 320892 AAACACTTTGCATACCTTTAAACCAACTCAATCTGAAGAAACTTATTCAGTCGTCACTGC 320833 Query 168004 TAACCGATTCTGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTT 168063 |||| || ||||||||||| ||||| |||||||| ||||| |||| || | || Sbjct 320832 CAACCACTTTTGGTCTCAAATCTTTGG-ATTGCTTTTTCTAATAAATGTTGATTATATTT 320774 Query 168064 CTTTATGCTTTTCGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCT 168123 ||||||| | | | || || || | | | || ||| || || | || ||| | | Sbjct 320773 CTTTATGTTATCTATACCAGTAATCGATTTATAGATGAGTGCTCTTAGAATAGTCGATTT 320714 Query 168124 CGCACTTAATCTTCGTGCTTATGACTTTGTGTCTCAGGAAGT-TAGAGCAGCAGAGGATC 168182 | | ||||| |||| |||||||||| ||||| ||| | || | || || ||| Sbjct 320713 GACTTTCAATCTATGTGCCTATGACTTTGCTTCTCAAGAAATCTATA--AGAGGAAAATC 320656 Query 168183 CAGAGTTTGAAACTTTCTATACGAAAAACATCCTC 168217 | || || | |||||||| || ||||| || ||| Sbjct 320655 CTGA-ATTCAGACTTTCTACACTAAAAATATTCTC 320622 >seq54 Length=3626826 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 166840 CCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAAC 166899 || ||||| ||||| ||||| |||||| | ||||||||||| ||||| |||||||| ||| Sbjct 2788072 CCCGTTGTAGGTATTTGGTTCACTGCTTTAGGTGTTAGCACTATGGCTTTCAACCTAAAC 2788131 Query 166900 GGTTTCAACTTCAACCA 166916 |||||||| |||||||| Sbjct 2788132 GGTTTCAATTTCAACCA 2788148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567189287430400