Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq33 264 1e-65 seq557 93.3 5e-14 seq184 89.7 6e-13 seq743 87.8 2e-12 seq167 87.8 2e-12 seq807 86.0 7e-12 seq46 86.0 7e-12 seq234 84.2 2e-11 seq1476 82.4 9e-11 seq998 82.4 9e-11 seq176 82.4 9e-11 >seq33 Length=1871104 Score = 264 bits (292), Expect = 1e-65 Identities = 603/893 (68%), Gaps = 17/893 (2%) Strand=Plus/Plus Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862 || || ||||| |||||| |||||||||||||||| |||||||||| ||| || ||| Sbjct 633999 TTCTGATATTCACCAACTCTTTTTTCAAAGAAATTAGTCTTTCCTTGCAATGAGATCAGC 634058 Query 92863 TTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTAC--A 92918 | || | | | || || | | || || || | ||| | | | | || || | Sbjct 634059 TCCATCCAATCAAAAGGGTTAGTCACATTGTA-TA-TCTTCCCGCACCCAAGCGCACCCA 634116 Query 92919 ATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAA 92978 | || |||||||| ||||| || || ||||| ||||| || | ||||| |||| | Sbjct 634117 ACAACCTATCAGCCACAAACTCAATATACTGGCTCATCAGCTCTCGGTTCATCCCTACCA 634176 Query 92979 GA-CGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 | || | ||| || |||||| | || || |||| ||| | || || || || Sbjct 634177 AAGCGCA-AGGAAGCGCGTCGCATACAAACTCCCTCTCAATTTCCACTGCATCACGCACT 634235 Query 93038 ATTTCTATTACTC--TACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACG 93095 ||| | | || | | || || || || | | ||| || |||| | ||||||| Sbjct 634236 ATTCCCTTCACACGCTCCTCATTCAAC-TTCTTCTTCAACA-AACTGTAGAGCAAGCACG 634293 Query 93096 CAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTG 93155 | || ||| || ||||| |||||||| || |||||||| || ||| ||||| || | Sbjct 634294 CGAAATCGCAGTGCAAACCCTCGTCTCGCGAGATCAACTCGTTAGAGAAAGTTAATCCCG 634353 Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215 | | || || || || || ||||||||||| | |||||| ||||| |||||||| | Sbjct 634354 GCATCAACCCGCGCTTTTTTAGCCAAAATATGGCGCAAAAACTTCCAGAGAAAAATATCC 634413 Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCC 93275 | |||||| |||||| || |||| | || || ||| | || | | ||||| Sbjct 634414 CCTCCACGCATGCAAAAGCGACAAGTCTCTCAGCGAAAGACTCCGA---TCCGTCGATCC 634470 Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335 || | || ||||| || || ||||| | |||||| | || ||||| |||| ||||| Sbjct 634471 ATCTCAAGGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTCTCGATCGCGTGAAATA 634530 Query 93336 GGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAG 93395 || |||| ||||||| || || || || | ||| ||| |||||| |||| Sbjct 634531 ATCGATTCTTCTCGGTCGAATCTTTGATATAAGTCTCCAGTAAAAGACTATACATCTCAG 634590 Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455 | || | |||||| || || ||||| || || |||||| | ||| || | || || | Sbjct 634591 AGTGAATATTCTCAATCGCGATTTGAAAGCCATAGAAAGCACGAGCCTCAGAGACTTGGA 634650 Query 93456 -CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaa 93514 || ||| | |||| | | | |||||||| || || ||||| || || ||||| Sbjct 634651 CCTCCTTCATAAAA-CGACCGGCAAGATTTTCGAGAACGATGCCATCAGAGGCGGCAAAG 634709 Query 93515 aaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGAT 93574 || || | | ||| ||| || ||||||||||| | || ||||| | | Sbjct 634710 AAGGCAAGGACATGAGATATGAAGTGTTTCTCATCGGAGGTTAGGGCCTCCCATTGGCGG 634769 Query 93575 AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTAC 93634 ||||||| || |||||||| || || |||||||||| || || || ||||| |||||| Sbjct 634770 AGATCTTGAGATAGATCGACCTCCTCTGCAGTCCAAAAGGAGGCCTCGGCTTTCTTGTAC 634829 Query 93635 ATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTT 93687 || |||||||| | | | ||||| ||||| || ||| || |||| ||||| Sbjct 634830 ATTTCCCATATCTGTGGGTATTGGATTGGGAACATGCAGAATCGATCTGGGTT 634882 >seq557 Length=676517 Score = 93.3 bits (102), Expect = 5e-14 Identities = 87/108 (81%), Gaps = 7/108 (6%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 420116 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 420173 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTA-TTATTGGAATTTTTG 126367 |||||||||| || ||||| ||||||| | | ||| | |||||||| Sbjct 420174 GCGTGGGTTCAAATCCCACTTCTGACAATTAATTTAATTTAATTTTTG 420221 >seq184 Length=2404754 Score = 89.7 bits (98), Expect = 6e-13 Identities = 84/104 (81%), Gaps = 6/104 (6%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGC 126322 |||| ||| |||||||||||||||||||||||||||||| | |||||| || | || Sbjct 92694 ACAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGC 92751 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||||| || |||||| ||| ||| ||| ||| ||||||| Sbjct 92752 GTGGGTTCAAATCCCACAGCTGTCAA--TATAATT--AATTTTT 92791 >seq743 Length=807116 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/92 (82%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 573279 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGGTCTGGTCTTCGAAAGAGGGC 573338 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||| || ||||| ||||||| ||||| Sbjct 573339 GTGGGTTCAAATCCCACTTCTGACAATTTATT 573370 >seq167 Length=3484751 Score = 87.8 bits (96), Expect = 2e-12 Identities = 76/93 (82%), Gaps = 6/93 (6%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGAG 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | | Sbjct 3159047 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGGG 3159104 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 ||||||||| || ||||| ||||||| ||||| Sbjct 3159105 CGTGGGTTCAAATCCCACTTCTGACAATTTATT 3159137 Score = 86.0 bits (94), Expect = 7e-12 Identities = 78/96 (81%), Gaps = 8/96 (8%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGAG 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| |||| | ||| Sbjct 2109168 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGAG 2109225 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||| || ||||| ||||| |||||| || Sbjct 2109226 CGTGGGTTCAAATCCCACTTCTGAC--ATTATTTTT 2109259 >seq807 Length=2915068 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/89 (82%), Gaps = 6/89 (7%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA-- 126320 ||||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 1702987 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGA 1702930 Query 126321 --GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 1702929 GGGCGTGGGTTCAAATCCCACTTCTGACA 1702901 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 6/86 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 1047742 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGAGTCAAGTTCTGGT--CCTCGTGAGAGGG 1047685 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 1047684 CGTGGGTTCAAATCCCACTTCTGACA 1047659 >seq46 Length=2470531 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/94 (82%), Gaps = 7/94 (7%) Strand=Plus/Plus Query 126260 TTTACAG-TCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGG 126318 ||||||| ||||| ||||||||||||||||||||||||| | ||| |||||| | ||| Sbjct 1941211 TTTACAGGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGT 1941268 Query 126319 GA----GCGTGGGTTCGAACCCCACACCTGACAA 126348 || |||||||||| || ||||| ||||||| Sbjct 1941269 GAGAAGGCGTGGGTTCAAATCCCACTTCTGACAA 1941302 >seq234 Length=1393318 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/83 (83%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 660966 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 661023 Query 126328 TTCGAACCCCACACCTGACAAAT 126350 ||| ||||||||| ||| || || Sbjct 661024 TTCAAACCCCACAGCTGTCATAT 661046 >seq1476 Length=5289327 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/91 (81%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 631520 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 631463 Query 126328 TTCGAACCCCACACCTGACA-AATTATTATT 126357 ||| || |||||| ||| || |||| || || Sbjct 631462 TTCAAATCCCACAGCTGTCATAATTTTTCTT 631432 >seq998 Length=122574 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||||| || |||| Sbjct 112912 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGTTCGAAAGG--GCGT 112969 Query 126325 GGGTTCGAACCCCACACCTGACAAATT 126351 |||||| || |||||| || ||| || Sbjct 112970 GGGTTCAAATCCCACAGTTGTCAATTT 112996 >seq176 Length=1547096 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/92 (80%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 1306596 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 1306537 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||| || ||||| ||||||| |||| Sbjct 1306536 GTGGGTTCAAATCCCACTTCTGACAACATATT 1306505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556818868381760