Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq33 132 1e-25 seq81 120 6e-22 seq407 95.1 2e-14 seq807 93.3 9e-14 seq357 93.3 9e-14 seq70 93.3 9e-14 seq1027 91.5 3e-13 seq596 87.8 4e-12 seq131 87.8 4e-12 seq54 87.8 4e-12 seq229 84.2 4e-11 >seq33 Length=1871104 Score = 132 bits (146), Expect = 1e-25 Identities = 292/435 (67%), Gaps = 2/435 (0%) Strand=Plus/Plus Query 251562 TTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGT 251621 ||| |||||||||| ||| || | || ||||| |||||||| | || || ||||| || Sbjct 634022 TTCAAAGAAATTAGTCTTTCCTTGCAATGAGATCAGCTCCATCCAATCAAAAGGGTTAGT 634081 Query 251622 GGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAG 251681 ||||||| ||| ||||| || | || | | || ||||||||||| | Sbjct 634082 CACATTGTATATCTTCCCGCACCCAAGCGCACCCAACAACCTATCAGCCACAAACTCAAT 634141 Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGAT 251741 |||||| | |||||| || |||||| || | || | ||||||| || || || | Sbjct 634142 ATACTGGCTCATCAGCTCTCGGTTCATCCCTACCAAAGCGCAAGGAAGCGCGTCGCATAC 634201 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 || ||| | || | | ||||| || ||| ||| ||||||| | || | || Sbjct 634202 AAACTCCCTCTCAATTTCCACTGCATCACGCACTATTCCCTTCACACGCTCCTCATTCAA 634261 Query 251802 CTTGTTCTCCAGCTTTGAGTACAG-GAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGC 251860 ||| |||| || | ||| || ||| ||| ||| | ||||| ||||||||| | Sbjct 634262 CTTCTTCTTCAACAAACTGTAGAGCAAGCACGCGAAA-TCGCAGTGCAAACCCTCGTCTC 634320 Query 251861 GACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGA 251920 | ||| |||||||| || | | | || ||||||| ||| || || | ||||| | Sbjct 634321 GCGAGATCAACTCGTTAGAGAAAGTTAATCCCGGCATCAACCCGCGCTTTTTTAGCCAAA 634380 Query 251921 AGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGC 251980 | || |||||||| ||||||||| | | ||||| || || | | || ||||| | Sbjct 634381 ATATGGCGCAAAAACTTCCAGAGAAAAATATCCCCTCCACGCATGCAAAAGCGACAAGTC 634440 Query 251981 GCTCAGCAAACGACT 251995 |||||| || |||| Sbjct 634441 TCTCAGCGAAAGACT 634455 >seq81 Length=1691141 Score = 120 bits (132), Expect = 6e-22 Identities = 201/291 (69%), Gaps = 0/291 (0%) Strand=Plus/Minus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577 || ||||| |||||||||| ||| | || || | ||| | | | |||||||| Sbjct 499777 GAGTTCATTAACAAGGAGCTTATTTTGTTTTCAGTGGCGGATCTTCAAAGATCTATTCCT 499718 Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637 | || | |||||||| |||||| | ||| | ||||| || || |||||| || Sbjct 499717 TCCATGATTGATGGCCTGAAGCCAACTCAGAGAAAGATACTTTTCAGTTGTTTCAAGAGG 499658 Query 218638 AACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGC 218697 || |||| | || ||||| || |||||||| ||||||||||| || | |||| Sbjct 499657 AATTTGGTCAAGGACATTAAAGTTTCTCAGTTTCAAGGTTATGTATCTGAGAAGTCTGCT 499598 Query 218698 TACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTG 218757 ||||| || ||||| || ||||| | | | | || | || ||||||||| | | ||| Sbjct 499597 TACCACCATGGTGATCAAAGTCTTAATGCTACAATCATTGGAATGGCACAGAATTTTGTT 499538 Query 218758 GGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 |||||||| ||||| ||| | || || || || || |||||| | ||| Sbjct 499537 GGCAGTAATAACATCAACCTTCTTGCACCAAAAGGACAATTTGGTACACGT 499487 >seq407 Length=2957635 Score = 95.1 bits (104), Expect = 2e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||||||||||| || || ||||||| || ||||||||||||||||| Sbjct 1859998 AGCCCGTCTAGCTCAGTCGGTAGAGTGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1860057 Query 142563 CCCCACATCGGGCAGAA 142579 |||||| ||||| ||| Sbjct 1860058 CCCCACGGCGGGCGGAA 1860074 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||| || ||||||||||||||||| || || ||||||| || ||||||||||||||||| Sbjct 1860134 AGCTCGTCTAGCTCAGTCGGTAGAGTGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1860193 Query 142563 CCCCAC 142568 |||||| Sbjct 1860194 CCCCAC 1860199 >seq807 Length=2915068 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 2458166 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2458225 Query 142563 CCCCAC 142568 |||||| Sbjct 2458226 CCCCAC 2458231 >seq357 Length=461249 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 218338 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 218397 Query 142563 CCCCAC 142568 |||||| Sbjct 218398 CCCCAC 218403 >seq70 Length=3714297 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 1979853 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1979912 Query 142563 CCCCAC 142568 |||||| Sbjct 1979913 CCCCAC 1979918 >seq1027 Length=3367805 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || ||||| |||||||||||||||||||| || ||||||| || ||||||||||||||| Sbjct 326256 ATTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 326197 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 326196 AGCCCCAC 326189 >seq596 Length=4721113 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 3761238 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3761297 Query 142563 CCCCAC 142568 | |||| Sbjct 3761298 CGCCAC 3761303 >seq131 Length=2543905 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 1170496 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1170555 Query 142563 CCCCAC 142568 ||||| Sbjct 1170556 TCCCAC 1170561 >seq54 Length=3626826 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 176071 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 176130 Query 142563 CCCCAC 142568 |||||| Sbjct 176131 CCCCAC 176136 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 2164166 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2164107 Query 142563 CCCCAC 142568 |||||| Sbjct 2164106 CCCCAC 2164101 >seq229 Length=2021663 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||||||| |||||| || |||||| || ||||||||||||||||| Sbjct 582945 AGCCCGTCTAGCTCAGTCGGTTGAGCGCAAGGCTCTTACCCTTGTGGTCGTGGGTTCGAG 583004 Query 142563 CCCCAC 142568 |||||| Sbjct 583005 CCCCAC 583010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027757468986184