Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq167 104 2e-17 seq1476 91.5 1e-13 seq271 91.5 1e-13 seq229 82.4 5e-11 >seq167 Length=3484751 Score = 104 bits (114), Expect = 2e-17 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| |||||| | ||||| ||||| |||||||| ||||| || ||| | ||||||| Sbjct 2202836 ACCAGCAGAGATTGATCTTCGCTGGAAAACAACTCGAAGACGGAAGAACCCTTGCCGATT 2202777 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 | ||||||||||||||||| || || ||| |||| | ||||| |||||||| Sbjct 2202776 ATAATATTCAGAAGGAATCCACACTGCATTTGGTTCTCCGTTTGCGAGGAGG 2202725 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 ||||| ||||| | || | |||| ||||| | ||||||||||| || || || ||| Sbjct 1288488 GATAAGGAGGGGATCCCACCAGACCAGCAGAGGTTGATCTTTGCTGGGAAGCAGCTTGAA 1288547 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| || ||| | || ||||| ||||||||||| ||||||||||| ||| |||| | Sbjct 1288548 GATGGAAGGACTCTTGCAGATTATAATATTCAGAAAGAATCTACTCTGCATTTGGTGCTT 1288607 Query 22047 CGTTTACGAGGAGGA 22061 ||| | || || ||| Sbjct 1288608 CGTCTGCGTGGTGGA 1288622 Score = 89.7 bits (98), Expect = 4e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| ||| | | ||||| ||||| || ||||| ||||| || ||| | ||||||| Sbjct 2202608 ACCAGCAGCGGTTGATCTTCGCTGGAAAGCAACTCGAAGACGGAAGAACACTCGCCGATT 2202549 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 | ||||| ||||||||||| ||||| ||| |||| | |||||| ||||||| Sbjct 2202548 ATAATATCCAGAAGGAATCGACTCTGCATCTGGTCCTCCGTTTAAGAGGAGG 2202497 >seq1476 Length=5289327 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 21917 AAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAA 21976 ||||||| || || ||||| | || | |||| ||||| || ||||| || || || Sbjct 642893 AAAAATTCAAGACAAGGAGGGCATCCCACCAGACCAGCAGAGGCTGATCTTCGCCGGTAA 642834 Query 21977 ACAACTAGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 22036 ||||| |||||| |||| |||||||||||||||||||||||||||| ||||| || Sbjct 642833 GCAACTGGAAGATGGCCGAACTTTGGCCGATTACAATATTCAGAAGGAATCCACTCTCCA 642774 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || ||||| ||| | || | |||| ||| | ||||||||||| || ||||| || ||| Sbjct 643567 GACAAAGAAGGTATCCCGCCAGACCAGCAGCGTCTTATCTTTGCCGGGAAACAGCTCGAA 643508 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| ||| |||||||||||||||| |||||||| || || ||||| | || | Sbjct 643507 GATGGCCGTACTTTGGCCGATTACAATATCCAGAAGGAGTCCACCCTTCACCTCGTCCTC 643448 Query 22047 CGTTTACGAGGAGG 22060 ||| | || ||||| Sbjct 643447 CGTCTCCGTGGAGG 643434 >seq271 Length=609135 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| ||| | || |||||||| |||||| | |||||| | |||| | || |||||| Sbjct 324175 CAACAAAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACTCTTGCAGATTAC 324116 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATT-ACGTTTACGAGGAGGA 22061 ||||| ||||||||||| |||||||| |||| || | | ||| |||||||| Sbjct 324115 AATATCCAGAAGGAATCAACTCTTCACTTGGTTTTGAGGCTTA-GAGGAGGA 324065 >seq229 Length=2021663 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | ||||| | || ||||| || || ||| | || |||| | || Sbjct 547862 ATGCAGATCTTCGTCAAAACCCTCACTGGCAAGACAATCACCCTTGAGGTGGAAAGCTCA 547803 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | | || ||||| ||||||| || |||||||| | ||||| || Sbjct 547802 GACACCATTGACAATGTTAAGGCAAAAATTCAGGACAAAGAGGGGATCCCACCTG---AC 547746 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||||| || || || ||||| || || || || ||| ||| | || || ||| Sbjct 547745 CAGCAGAGGCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGGCGCACTCTTGCTGACTAC 547686 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||| || ||||| || |||| | || | || ||||| Sbjct 547685 AATATTCAGAAGGAGTCCACTCTCCACTTGGTGCTTCGCCTTCGTGGAGG 547636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358098507372496